| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30408 | 3:20,913,366-20,914,430 | - | C2H3g03313 | CX3g029922 | LOC_Os03g39850 | Os03g0595600 | - | Detail |
| C1H3g25743 | 3:20,917,777-20,921,508 | - | C2H3g11519 | CX3g026613 | LOC_Os03g39860 | Os03g0595800 | - | Detail |
| C1H3g12058 | 3:20,932,147-20,935,383 | - | C2H3g18490 | CX3g025071 | LOC_Os03g39910 | Os03g0596400 | - | Detail |
| C1H3g10947 | 3:20,938,976-20,947,409 | + | - | - | LOC_Os03g39880 | Os03g0596200 | - | Detail |
| C1H3g14608 | 3:20,951,288-20,952,150 | - | C2H3g19432 | CX3g028577 | LOC_Os03g40000 | Os03g0596800 | - | Detail |
| C1H3g14273 | 3:20,952,983-20,960,947 | - | C2H3g02583 | CX3g029325 | LOC_Os03g40010 | Os03g0596900 | - | Detail |
| C1H3g16422 | 3:20,978,602-20,980,830 | - | C2H3g09880 | CX3g030669 | LOC_Os03g40020 | Os03g0597200 | YSA | Detail |
| C1H3g01921 | 3:20,985,537-20,986,956 | - | C2H3g23840 | CX3g025021 | LOC_Os03g40040 | Os03g0597400 | - | Detail |
| C1H3g24981 | 3:20,988,575-20,989,100 | - | C2H3g26940 | - | - | - | - | Detail |
| C1H3g16396 | 3:20,992,754-20,994,723 | + | C2H3g01791 | CX3g029448 | LOC_Os03g40060 | Os03g0712600 | - | Detail |
| C1H3g07504 | 3:20,995,243-20,997,828 | - | C2H3g25378 | CX3g028607 | LOC_Os03g40070 | Os03g0597600 | - | Detail |
| C1H3g17059 | 3:21,003,651-21,004,909 | - | C2H3g15708 | CX3g026053 | - | - | - | Detail |
| C1H3g25847 | 3:21,022,858-21,025,802 | + | C2H3g07741 | CX3g025955 | LOC_Os03g40100 | Os03g0598100 | - | Detail |
| C1H3g09764 | 3:21,026,870-21,033,787 | - | C2H3g15953 | CX3g025103 | LOC_Os03g40110 | Os03g0598200 | - | Detail |
| C1H3g00363 | 3:21,040,916-21,042,476 | - | C2H3g29831 | CX3g025618 | LOC_Os03g40130 | - | - | Detail |
| C1H3g19636 | 3:21,096,738-21,098,755 | + | C2H3g27050 | CX3g030408 | LOC_Os03g40170 | Os03g0598700 | - | Detail |
| C1H3g15380 | 3:21,100,719-21,102,111 | - | C2H3g27393 | CX3g029644 | LOC_Os03g40180 | Os03g0598800 | - | Detail |
| C1H3g11506 | 3:21,105,214-21,107,585 | - | C2H3g12187 | CX3g030402 | - | Os03g0598900 | - | Detail |
| C1H3g13942 | 3:21,118,422-21,124,239 | - | C2H3g00333 | CX3g029245 | LOC_Os03g40194 | Os03g0599000 | - | Detail |
| C1H3g19744 | 3:21,148,635-21,150,370 | - | C2H3g25565 | CX3g028997 | LOC_Os03g40250 | Os03g0599400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30676 | 3:20,784,935-20,789,025 | + | C1H3g31743 | CX3g027969 | LOC_Os03g40540 | Os03g0602300 | OsBRD1, OsDWARF | Detail |
| C2H3g17661 | 3:20,794,087-20,799,178 | + | C1H3g17649 | CX3g026097 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| C2H3g06081 | 3:20,802,911-20,808,131 | - | C1H3g14588 | CX3g026160 | LOC_Os03g40610 | Os03g0603100 | - | Detail |
| C2H3g09028 | 3:20,872,653-20,876,352 | + | C1H3g26758 | CX3g029684 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| C2H3g19200 | 3:20,924,799-20,925,579 | + | C1H3g15118 | CX3g029136 | - | Os03g0789600 | - | Detail |
| C2H3g23447 | 3:20,937,852-20,939,276 | + | C1H3g27392 | CX3g025313 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| C2H3g01476 | 3:20,940,772-20,946,213 | - | C1H3g29572 | CX3g029068 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| C2H3g29089 | 3:20,994,865-20,996,867 | - | C1H3g15527 | CX3g025804 | LOC_Os03g40930 | Os03g0606100 | - | Detail |
| C2H3g00163 | 3:21,042,269-21,044,985 | - | C1H3g29161 | CX3g025127 | LOC_Os03g41064 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| C2H3g26892 | 3:21,057,321-21,057,773 | - | C1H3g01431 | - | LOC_Os03g41050 | Os03g0607100 | - | Detail |
| C2H3g02928 | 3:21,058,798-21,059,152 | - | C1H3g01550 | CX3g027262 | LOC_Os03g41060 | Os03g0607200 | - | Detail |
| C2H3g23130 | 3:21,068,563-21,070,046 | - | C1H12g22810 | - | - | - | - | Detail |
| C2H3g22608 | 3:21,085,564-21,088,849 | - | C1H3g28561 | CX3g025127 | LOC_Os03g41070 | Os03g0607400 | - | Detail |
| C2H3g05599 | 3:21,090,319-21,095,973 | + | C1H3g18716 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g06432 | 3:21,097,436-21,097,702 | + | C1H3g08205 | CX3g026140 | - | - | - | Detail |
| C2H3g18057 | 3:21,100,668-21,115,704 | + | C1H3g15026 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g23306 | 3:21,116,126-21,117,088 | - | C1H3g16629 | CX3g027100 | - | Os03g0653900 | - | Detail |
| C2H3g00656 | 3:21,209,983-21,210,727 | + | - | - | - | - | - | Detail |
| C2H3g10659 | 3:21,214,357-21,222,145 | - | C1H3g05229 | CX3g025340 | - | Os03g0680100 | - | Detail |
| C2H3g06565 | 3:21,284,912-21,286,026 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |