| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27459 | 3:17,643,889-17,650,349 | - | C2H3g02896 | CX3g025874 | LOC_Os03g33590 | Os03g0448700 | - | Detail |
| C1H3g11876 | 3:17,701,003-17,705,075 | + | C2H3g09597 | CX3g025469 | LOC_Os03g33650 | Os03g0449200 | SHL4, SHO2, SHO2/SHL4, OsAGO7 | Detail |
| C1H3g10349 | 3:17,770,312-17,773,861 | - | C2H3g06387 | CX3g028866 | LOC_Os03g33012 | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C1H3g26549 | 3:17,780,356-17,780,712 | - | C2H3g24450 | - | - | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C1H3g16808 | 3:17,907,322-17,911,447 | - | C2H3g04259 | CX3g031079 | LOC_Os03g34040 | Os03g0452300 | - | Detail |
| C1H3g08800 | 3:17,973,712-17,976,997 | + | C2H3g20904 | CX3g026859 | LOC_Os03g34280 | Os03g0453800 | - | Detail |
| C1H3g06458 | 3:17,981,056-17,981,551 | + | C2H3g03414 | CX3g031021 | LOC_Os08g09860 | Os03g0786100 | - | Detail |
| C1H3g13672 | 3:17,981,611-17,986,020 | + | C2H3g06895 | CX3g026131 | - | Os03g0786100 | - | Detail |
| C1H3g14005 | 3:17,990,783-17,997,819 | - | C2H3g12265 | CX3g028089 | LOC_Os03g34300 | Os03g0454100 | - | Detail |
| C1H3g30334 | 3:18,065,445-18,075,548 | + | C2H3g24060 | CX3g029528 | - | Os03g0678400 | - | Detail |
| C1H3g23806 | 3:18,141,191-18,144,257 | + | C2H3g17975 | CX3g026576 | - | Os03g0759000 | - | Detail |
| C1H3g18625 | 3:18,369,083-18,384,635 | - | C2H3g10346 | CX3g027364 | LOC_Os03g35340 | Os03g0554900 | - | Detail |
| C1H3g29658 | 3:18,400,674-18,401,960 | - | C2H3g04971 | CX3g026045 | LOC_Os03g35370 | - | - | Detail |
| C1H3g29570 | 3:18,411,452-18,413,140 | - | C2H3g05979 | - | LOC_Os03g35454 | - | - | Detail |
| C1H3g05847 | 3:18,463,594-18,467,637 | + | C2H3g12208 | CX3g030899 | - | - | - | Detail |
| C1H3g05109 | 3:18,510,106-18,514,463 | + | C2H3g23939 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C1H3g10727 | 3:18,577,469-18,581,510 | + | C2H3g12208 | CX3g030899 | - | - | - | Detail |
| C1H3g15595 | 3:18,624,099-18,628,160 | + | C2H3g23939 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C1H3g27683 | 3:18,689,653-18,691,247 | - | C2H3g20317 | - | LOC_Os03g35620 | - | - | Detail |
| C1H3g27677 | 3:18,921,960-18,924,576 | - | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g17454 | 4:9,046,141-9,046,842 | + | C1H4g21617 | CX4g036140 | LOC_Os04g18090 | Os04g0253000 | OsHis1.1 | Detail |
| C2H4g18818 | 4:9,136,552-9,139,814 | + | C1H4g08510 | CX4g035863 | LOC_Os04g18200 | Os04g0254000 | - | Detail |
| C2H4g21534 | 4:9,621,306-9,622,501 | - | - | - | - | - | - | Detail |
| C2H4g29825 | 4:9,695,986-9,707,574 | - | C1H4g31855 | CX4g035037 | LOC_Os04g19684 | Os04g0266400 | - | Detail |
| C2H4g12107 | 4:9,708,142-9,708,411 | - | C1H4g19173 | CX4g032792 | - | Os04g0508800 | - | Detail |
| C2H4g27229 | 4:9,708,460-9,708,768 | - | C1H4g23732 | CX4g032661 | LOC_Os04g19700 | Os04g0266700 | - | Detail |
| C2H4g28498 | 4:9,752,774-9,758,749 | + | C1H4g14102 | CX4g031869 | LOC_Os04g19740 | Os04g0266900 | - | Detail |
| C2H4g24722 | 4:9,859,006-9,860,434 | + | C1H4g18182 | CX4g034751 | LOC_Os04g20070 | Os04g0269100 | - | Detail |
| C2H4g29933 | 4:9,861,375-9,862,390 | + | C1H4g18182 | CX4g034751 | LOC_Os04g22730 | Os04g0376300 | OsPLS4 | Detail |
| C2H4g18468 | 4:9,920,911-9,928,580 | + | C1H4g10534 | CX4g032631 | LOC_Os04g20164 | Os04g0269600 | - | Detail |
| C2H4g15448 | 4:9,934,483-9,935,678 | + | C1H4g17577 | CX4g035708 | LOC_Os09g03490 | Os04g0269700 | - | Detail |
| C2H4g06098 | 4:9,945,207-9,958,133 | + | C1H4g20799 | CX4g035940 | LOC_Os04g20220 | Os04g0270100 | - | Detail |
| C2H4g09540 | 4:9,961,554-9,964,844 | - | C1H4g05159 | CX4g032998 | LOC_Os04g20230 | Os04g0270200 | - | Detail |
| C2H4g16551 | 4:10,021,509-10,034,645 | - | C1H4g20618 | CX4g035775 | LOC_Os04g20270 | Os04g0271000 | - | Detail |
| C2H4g11411 | 4:10,045,115-10,048,730 | + | C1H4g05138 | CX4g035052 | LOC_Os04g20280 | Os04g0271200 | - | Detail |
| C2H4g15311 | 4:10,106,893-10,108,646 | - | C1H4g16428 | CX4g033602 | - | - | - | Detail |
| C2H4g29996 | 4:10,149,595-10,151,744 | + | C1H4g08366 | CX4g031564 | LOC_Os04g20510 | Os04g0273100 | - | Detail |
| C2H4g17258 | 4:10,175,347-10,180,229 | - | C1H4g21420 | CX4g033803 | LOC_Os04g20560 | Os04g0273900 | - | Detail |
| C2H4g05451 | 4:10,194,932-10,197,956 | - | C1H4g18833 | CX4g035160 | - | Os04g0274250 | - | Detail |
| C2H4g11645 | 4:10,200,694-10,205,262 | - | C1H4g19581 | CX4g035547 | LOC_Os04g20590 | Os04g0274400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |