| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27459 | 3:17,643,889-17,650,349 | - | C2H3g02896 | CX3g025874 | LOC_Os03g33590 | Os03g0448700 | - | Detail |
| C1H3g11876 | 3:17,701,003-17,705,075 | + | C2H3g09597 | CX3g025469 | LOC_Os03g33650 | Os03g0449200 | SHL4, SHO2, SHO2/SHL4, OsAGO7 | Detail |
| C1H3g10349 | 3:17,770,312-17,773,861 | - | C2H3g06387 | CX3g028866 | LOC_Os03g33012 | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C1H3g26549 | 3:17,780,356-17,780,712 | - | C2H3g24450 | - | - | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C1H3g16808 | 3:17,907,322-17,911,447 | - | C2H3g04259 | CX3g031079 | LOC_Os03g34040 | Os03g0452300 | - | Detail |
| C1H3g08800 | 3:17,973,712-17,976,997 | + | C2H3g20904 | CX3g026859 | LOC_Os03g34280 | Os03g0453800 | - | Detail |
| C1H3g06458 | 3:17,981,056-17,981,551 | + | C2H3g03414 | CX3g031021 | LOC_Os08g09860 | Os03g0786100 | - | Detail |
| C1H3g13672 | 3:17,981,611-17,986,020 | + | C2H3g06895 | CX3g026131 | - | Os03g0786100 | - | Detail |
| C1H3g14005 | 3:17,990,783-17,997,819 | - | C2H3g12265 | CX3g028089 | LOC_Os03g34300 | Os03g0454100 | - | Detail |
| C1H3g30334 | 3:18,065,445-18,075,548 | + | C2H3g24060 | CX3g029528 | - | Os03g0678400 | - | Detail |
| C1H3g23806 | 3:18,141,191-18,144,257 | + | C2H3g17975 | CX3g026576 | - | Os03g0759000 | - | Detail |
| C1H3g18625 | 3:18,369,083-18,384,635 | - | C2H3g10346 | CX3g027364 | LOC_Os03g35340 | Os03g0554900 | - | Detail |
| C1H3g29658 | 3:18,400,674-18,401,960 | - | C2H3g04971 | CX3g026045 | LOC_Os03g35370 | - | - | Detail |
| C1H3g29570 | 3:18,411,452-18,413,140 | - | C2H3g05979 | - | LOC_Os03g35454 | - | - | Detail |
| C1H3g05847 | 3:18,463,594-18,467,637 | + | C2H3g12208 | CX3g030899 | - | - | - | Detail |
| C1H3g05109 | 3:18,510,106-18,514,463 | + | C2H3g23939 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C1H3g10727 | 3:18,577,469-18,581,510 | + | C2H3g12208 | CX3g030899 | - | - | - | Detail |
| C1H3g15595 | 3:18,624,099-18,628,160 | + | C2H3g23939 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C1H3g27683 | 3:18,689,653-18,691,247 | - | C2H3g20317 | - | LOC_Os03g35620 | - | - | Detail |
| C1H3g27677 | 3:18,921,960-18,924,576 | - | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g19190 | 3:25,554,570-25,561,711 | + | C1H3g13231 | CX3g031047 | LOC_Os03g59910 | Os03g0565900 | - | Detail |
| C2H3g17803 | 3:25,570,498-25,573,219 | + | C1H3g02064 | CX3g029768 | LOC_Os03g49050 | Os03g0109300 | - | Detail |
| C2H3g15504 | 3:25,581,060-25,584,596 | + | C1H3g16785 | CX3g028722 | LOC_Os03g49126 | Os03g0697833 | - | Detail |
| C2H3g27379 | 3:25,587,707-25,592,889 | - | C1H3g27645 | CX3g029661 | LOC_Os03g49140 | Os03g0698350 | - | Detail |
| C2H3g22127 | 3:25,599,797-25,603,130 | - | C1H3g05637 | CX1g002153 | LOC_Os03g63870 | Os03g0429900 | - | Detail |
| C2H3g20960 | 3:25,616,219-25,619,400 | + | C1H3g28768 | CX3g030702 | LOC_Os03g49150 | Os03g0698500 | - | Detail |
| C2H3g00073 | 3:25,627,418-25,631,109 | + | C1H3g04379 | CX3g025989 | LOC_Os03g49170 | Os03g0698800 | - | Detail |
| C2H3g03385 | 3:25,632,477-25,636,312 | - | C1H3g08733 | CX3g029194 | LOC_Os03g49180 | Os03g0698900 | - | Detail |
| C2H3g06339 | 3:25,639,724-25,644,239 | - | C1H3g14380 | CX3g027765 | LOC_Os03g49200 | Os03g0699100 | - | Detail |
| C2H3g19400 | 3:25,647,107-25,653,178 | + | C1H3g06128 | CX3g025779 | LOC_Os03g49210 | Os03g0699200 | - | Detail |
| C2H3g05406 | 3:25,653,677-25,656,852 | + | C1H3g23737 | CX3g029958 | LOC_Os03g49220 | Os03g0699300 | - | Detail |
| C2H3g18347 | 3:25,657,907-25,660,725 | - | C1H3g16011 | CX3g028209 | LOC_Os03g49230 | Os03g0699400 | - | Detail |
| C2H3g00103 | 3:25,661,782-25,664,015 | + | C1H3g30535 | CX3g029586 | LOC_Os03g49250 | Os03g0699600 | - | Detail |
| C2H3g17436 | 3:25,665,813-25,669,803 | + | C1H3g05707 | CX3g027914 | LOC_Os03g49260 | Os03g0699700 | Osr9-LOX1 | Detail |
| C2H3g05028 | 3:25,695,027-25,700,308 | + | C1H3g00070 | CX3g026782 | LOC_Os03g49350 | Os03g0700400 | LOX-3 | Detail |
| C2H3g00658 | 3:25,714,832-25,721,118 | + | C1H3g28644 | CX3g026204 | LOC_Os03g49380 | Os03g0700700 | - | Detail |
| C2H3g05258 | 3:25,724,525-25,732,125 | + | C1H3g00971 | CX3g025372 | LOC_Os03g49400 | Os03g0700800 | - | Detail |
| C2H3g25047 | 3:25,736,986-25,745,311 | + | C1H3g06905 | CX3g029939 | LOC_Os03g49420 | Os03g0701000 | - | Detail |
| C2H3g16404 | 3:25,747,030-25,749,728 | - | C1H3g16586 | CX3g025036 | LOC_Os03g49430 | Os03g0701100 | - | Detail |
| C2H3g29777 | 3:25,750,626-25,753,803 | + | C1H3g02438 | CX3g031052 | LOC_Os03g49440 | Os03g0701200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |