| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27459 | 3:17,643,889-17,650,349 | - | C2H3g02896 | CX3g025874 | LOC_Os03g33590 | Os03g0448700 | - | Detail |
| C1H3g11876 | 3:17,701,003-17,705,075 | + | C2H3g09597 | CX3g025469 | LOC_Os03g33650 | Os03g0449200 | SHL4, SHO2, SHO2/SHL4, OsAGO7 | Detail |
| C1H3g10349 | 3:17,770,312-17,773,861 | - | C2H3g06387 | CX3g028866 | LOC_Os03g33012 | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C1H3g26549 | 3:17,780,356-17,780,712 | - | C2H3g24450 | - | - | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C1H3g16808 | 3:17,907,322-17,911,447 | - | C2H3g04259 | CX3g031079 | LOC_Os03g34040 | Os03g0452300 | - | Detail |
| C1H3g08800 | 3:17,973,712-17,976,997 | + | C2H3g20904 | CX3g026859 | LOC_Os03g34280 | Os03g0453800 | - | Detail |
| C1H3g06458 | 3:17,981,056-17,981,551 | + | C2H3g03414 | CX3g031021 | LOC_Os08g09860 | Os03g0786100 | - | Detail |
| C1H3g13672 | 3:17,981,611-17,986,020 | + | C2H3g06895 | CX3g026131 | - | Os03g0786100 | - | Detail |
| C1H3g14005 | 3:17,990,783-17,997,819 | - | C2H3g12265 | CX3g028089 | LOC_Os03g34300 | Os03g0454100 | - | Detail |
| C1H3g30334 | 3:18,065,445-18,075,548 | + | C2H3g24060 | CX3g029528 | - | Os03g0678400 | - | Detail |
| C1H3g23806 | 3:18,141,191-18,144,257 | + | C2H3g17975 | CX3g026576 | - | Os03g0759000 | - | Detail |
| C1H3g18625 | 3:18,369,083-18,384,635 | - | C2H3g10346 | CX3g027364 | LOC_Os03g35340 | Os03g0554900 | - | Detail |
| C1H3g29658 | 3:18,400,674-18,401,960 | - | C2H3g04971 | CX3g026045 | LOC_Os03g35370 | - | - | Detail |
| C1H3g29570 | 3:18,411,452-18,413,140 | - | C2H3g05979 | - | LOC_Os03g35454 | - | - | Detail |
| C1H3g05847 | 3:18,463,594-18,467,637 | + | C2H3g12208 | CX3g030899 | - | - | - | Detail |
| C1H3g05109 | 3:18,510,106-18,514,463 | + | C2H3g23939 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C1H3g10727 | 3:18,577,469-18,581,510 | + | C2H3g12208 | CX3g030899 | - | - | - | Detail |
| C1H3g15595 | 3:18,624,099-18,628,160 | + | C2H3g23939 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C1H3g27683 | 3:18,689,653-18,691,247 | - | C2H3g20317 | - | LOC_Os03g35620 | - | - | Detail |
| C1H3g27677 | 3:18,921,960-18,924,576 | - | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g02722 | 12:9,934,713-9,938,479 | + | C1H12g10428 | - | LOC_Os12g20410 | Os12g0299700 | OsMAB | Detail |
| C2H12g11495 | 12:9,939,578-9,940,898 | + | C1H12g25886 | CX12g017151 | LOC_Os12g20410 | Os12g0299700 | OsMAB | Detail |
| C2H12g17974 | 12:10,071,367-10,072,172 | - | C1H12g01151 | CX12g015803 | LOC_Os02g24780 | - | - | Detail |
| C2H12g00861 | 12:10,213,477-10,219,191 | + | C1H12g04555 | CX12g018476 | LOC_Os11g41400 | Os12g0625200 | - | Detail |
| C2H12g05614 | 12:10,346,669-10,352,383 | + | C1H12g21600 | CX12g016544 | LOC_Os11g41400 | Os12g0625200 | - | Detail |
| C2H12g02367 | 12:10,419,604-10,430,698 | + | C1H12g29221 | CX12g015822 | LOC_Os12g21500 | Os12g0403800 | - | Detail |
| C2H12g18879 | 12:10,692,633-10,699,778 | + | C1H12g09047 | CX12g016009 | LOC_Os12g21700 | Os12g0405100 | - | Detail |
| C2H12g13525 | 12:10,701,284-10,704,543 | + | C1H12g11227 | CX12g015064 | LOC_Os12g21710 | Os12g0405200 | T20, HTD12 | Detail |
| C2H12g28725 | 12:10,727,451-10,731,836 | + | C1H12g24672 | - | - | Os12g0405700 | - | Detail |
| C2H12g11042 | 12:10,740,335-10,743,189 | - | C1H12g12079 | CX12g017894 | LOC_Os12g21789 | Os12g0406100 | - | Detail |
| C2H12g07596 | 12:10,746,201-10,749,659 | - | C1H12g19301 | CX3g025427 | LOC_Os12g21798 | Os12g0406200 | - | Detail |
| C2H12g04795 | 12:10,751,725-10,752,356 | - | C1H12g26931 | - | LOC_Os12g21810 | Os12g0406333 | - | Detail |
| C2H12g20448 | 12:10,781,126-10,781,869 | - | C1H12g00416 | CX12g017259 | LOC_Os12g21820 | Os12g0406333 | - | Detail |
| C2H12g16576 | 12:10,813,683-10,815,880 | - | C1H12g01344 | CX12g015535 | LOC_Os12g21890 | Os12g0407200 | - | Detail |
| C2H12g17465 | 12:10,816,896-10,819,007 | - | C1H12g03871 | CX12g015077 | LOC_Os12g21870 | Os12g0407300 | - | Detail |
| C2H12g12292 | 12:10,822,851-10,823,561 | + | C1H12g08395 | - | - | - | - | Detail |
| C2H12g22133 | 12:10,825,069-10,833,514 | - | C1H12g14937 | CX12g015535 | LOC_Os12g21890 | Os12g0407500 | - | Detail |
| C2H12g07548 | 12:10,846,027-10,847,406 | + | C1H12g00949 | CX12g016372 | LOC_Os12g21930 | Os12g0407900 | - | Detail |
| C2H12g12037 | 12:10,853,258-10,855,501 | - | C1H12g19547 | CX12g016878 | LOC_Os12g21940 | Os12g0408000 | - | Detail |
| C2H12g20707 | 12:10,867,053-10,867,430 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |