| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04300 | 3:16,819,816-16,824,343 | + | C2H3g09474 | CX3g030993 | LOC_Os03g32160 | Os03g0436300 | - | Detail |
| C1H3g16344 | 3:16,829,597-16,830,463 | - | - | CX3g029418 | - | - | - | Detail |
| C1H3g27865 | 3:16,930,834-16,936,158 | - | C2H3g20512 | CX3g031352 | LOC_Os03g32270 | Os03g0437600 | - | Detail |
| C1H3g24236 | 3:16,974,816-16,976,168 | - | C2H3g26379 | CX3g028299 | LOC_Os03g32314 | Os03g0438100 | - | Detail |
| C1H3g16844 | 3:16,996,638-16,997,127 | + | C2H3g08716 | - | LOC_Os03g32330 | Os03g0438400 | - | Detail |
| C1H3g29565 | 3:17,028,027-17,030,040 | + | - | CX3g025835 | - | - | - | Detail |
| C1H3g27126 | 3:17,081,880-17,083,639 | + | C2H3g25901 | CX3g028421 | LOC_Os03g32470 | Os03g0439500 | - | Detail |
| C1H3g06834 | 3:17,131,362-17,133,233 | - | C2H3g13437 | CX3g025406 | LOC_Os03g32490 | Os03g0439700 | - | Detail |
| C1H3g21761 | 3:17,135,624-17,137,160 | + | C2H3g15363 | CX3g028175 | LOC_Os03g32499 | Os03g0439800 | - | Detail |
| C1H3g11595 | 3:17,158,180-17,160,553 | + | C2H3g25565 | CX3g026641 | LOC_Os03g32580 | Os03g0440900 | - | Detail |
| C1H3g28711 | 3:17,160,880-17,170,141 | - | C2H3g20190 | CX3g027696 | LOC_Os03g32590 | Os03g0441000 | - | Detail |
| C1H3g12283 | 3:17,179,068-17,181,578 | - | C2H3g11825 | CX3g025857 | LOC_Os03g32620 | Os03g0441400 | - | Detail |
| C1H3g00838 | 3:17,191,128-17,196,249 | + | - | CX3g029076 | - | Os03g0441700 | - | Detail |
| C1H3g17255 | 3:17,236,177-17,237,899 | + | C2H3g13449 | - | LOC_Os07g18930 | - | - | Detail |
| C1H3g27671 | 3:17,279,553-17,284,256 | + | - | CX3g029188 | - | - | - | Detail |
| C1H3g20328 | 3:17,284,414-17,287,843 | + | C2H3g23509 | CX3g029188 | LOC_Os03g31026 | - | - | Detail |
| C1H3g09033 | 3:17,289,850-17,290,527 | + | C2H3g07036 | CX3g025420 | LOC_Os03g32790 | Os03g0442900 | - | Detail |
| C1H3g08585 | 3:17,518,380-17,519,085 | - | C2H3g18530 | CX3g029665 | LOC_Os03g33090 | Os03g0445700 | OsLBD37 | Detail |
| C1H3g15486 | 3:17,557,407-17,559,054 | + | C2H3g30048 | CX3g024950 | - | - | - | Detail |
| C1H3g26264 | 3:17,625,148-17,632,637 | - | C2H3g30096 | CX3g029845 | LOC_Os03g33580 | Os03g0448600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g23727 | 6:1,154,556-1,156,689 | + | C1H6g21967 | CX6g044602 | LOC_Os06g04080 | Os06g0131500 | - | Detail |
| C2H6g24358 | 6:1,162,866-1,166,381 | - | C1H6g10070 | CX6g041745 | LOC_Os06g04090 | Os06g0131700 | - | Detail |
| C2H6g10300 | 6:1,184,169-1,185,533 | - | - | CX6g042310 | LOC_Os06g04130 | Os06g0132100 | - | Detail |
| C2H6g28984 | 6:1,187,456-1,188,025 | - | C1H6g21299 | CX6g043564 | LOC_Os06g04140 | Os06g0132300 | - | Detail |
| C2H6g09752 | 6:1,188,834-1,189,814 | - | C1H6g21299 | CX6g044687 | LOC_Os06g04150 | Os06g0132400 | YGL18, ChlM | Detail |
| C2H6g08599 | 6:1,191,519-1,197,341 | - | C1H6g23000 | CX6g044041 | LOC_Os06g04169 | Os06g0132500 | OsBDG | Detail |
| C2H6g25055 | 6:1,211,402-1,215,328 | - | C1H6g17422 | CX6g041905 | LOC_Os06g04190 | Os06g0132600 | OsRAD1, RAD1 | Detail |
| C2H6g03148 | 6:1,218,691-1,223,612 | + | C1H6g23540 | CX6g043331 | LOC_Os06g04200 | Os06g0133000 | WX1, wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI | Detail |
| C2H6g22217 | 6:1,226,616-1,226,912 | + | - | CX6g043924 | LOC_Os06g04210 | Os06g0133200 | - | Detail |
| C2H6g28022 | 6:1,230,375-1,230,659 | + | - | CX6g044984 | LOC_Os06g04220 | Os06g0133300 | - | Detail |
| C2H6g14484 | 6:1,233,911-1,234,174 | + | C1H6g09083 | CX6g042298 | LOC_Os06g04230 | Os06g0133400 | - | Detail |
| C2H6g03555 | 6:1,235,005-1,235,286 | - | C1H6g09083 | CX6g042298 | LOC_Os06g04240 | Os06g0133500 | - | Detail |
| C2H6g25685 | 6:1,241,084-1,242,151 | + | - | CX6g042617 | LOC_Os06g04250 | Os06g0133600 | - | Detail |
| C2H6g05959 | 6:1,257,209-1,259,084 | + | C1H6g07345 | CX6g045091 | LOC_Os06g04470 | Os06g0136100 | - | Detail |
| C2H6g30353 | 6:1,260,546-1,264,031 | - | C1H6g21882 | CX6g044476 | LOC_Os06g04270 | Os06g0133800 | - | Detail |
| C2H6g15004 | 6:1,267,478-1,271,368 | + | C1H6g02027 | CX6g044113 | LOC_Os06g04280 | Os06g0133900 | EPSPS, EPSPs, OsEPSPS | Detail |
| C2H6g06475 | 6:1,271,937-1,273,654 | - | C1H6g14754 | CX6g041350 | LOC_Os06g04290 | Os06g0134000 | - | Detail |
| C2H6g13486 | 6:1,274,602-1,276,735 | - | C1H6g07407 | CX6g045804 | LOC_Os06g04300 | Os06g0134050 | - | Detail |
| C2H6g20989 | 6:1,276,836-1,277,219 | - | C1H6g07407 | CX6g045804 | LOC_Os06g04300 | Os06g0134050 | - | Detail |
| C2H6g29611 | 6:1,286,539-1,288,975 | - | C1H6g30767 | CX6g042141 | LOC_Os06g04330 | Os06g0134300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |