| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g10798 | 3:16,483,142-16,495,994 | + | C2H3g07855 | CX3g028155 | LOC_Os03g31550 | Os03g0429800 | - | Detail |
| C1H3g26471 | 3:16,496,954-16,498,674 | + | - | - | - | - | - | Detail |
| C1H3g14619 | 3:16,506,529-16,511,143 | + | C2H3g12546 | CX3g028121 | LOC_Os03g31570 | Os03g0430000 | OsDES1 | Detail |
| C1H3g12863 | 3:16,518,496-16,519,698 | + | C2H3g18752 | - | LOC_Os03g31594 | Os03g0430400 | OsJMJ715 | Detail |
| C1H3g13146 | 3:16,525,414-16,532,578 | + | C2H3g18752 | CX3g026444 | LOC_Os03g31594 | Os03g0430400 | OsJMJ715 | Detail |
| C1H3g04215 | 3:16,536,073-16,538,442 | + | C2H3g13597 | CX3g030845 | LOC_Os03g31630 | Os03g0430500 | OsSUB29 | Detail |
| C1H3g24007 | 3:16,540,272-16,540,793 | + | C2H3g04912 | CX3g030092 | - | - | - | Detail |
| C1H3g11550 | 3:16,540,928-16,541,260 | + | C2H3g04912 | CX3g029098 | LOC_Os03g31634 | Os03g0743650 | - | Detail |
| C1H3g12654 | 3:16,555,999-16,557,284 | + | C2H3g09273 | CX3g029853 | LOC_Os03g31679 | Os03g0431100 | OsWIH2 | Detail |
| C1H3g10950 | 3:16,558,728-16,566,391 | - | C2H3g11483 | CX3g026573 | LOC_Os03g31690 | Os03g0431200 | - | Detail |
| C1H3g03395 | 3:16,578,391-16,594,929 | + | C2H3g08545 | CX3g026463 | LOC_Os03g31730 | Os03g0431800 | - | Detail |
| C1H3g15477 | 3:16,603,674-16,610,712 | - | C2H3g19753 | CX3g025912 | LOC_Os03g31750 | Os03g0432100 | - | Detail |
| C1H3g17819 | 3:16,647,106-16,657,316 | + | C2H3g18740 | CX3g029807 | LOC_Os03g31839 | Os03g0432900 | - | Detail |
| C1H3g09806 | 3:16,737,977-16,740,934 | + | C2H3g14377 | CX3g025418 | LOC_Os03g32040 | Os03g0434400 | - | Detail |
| C1H3g22912 | 3:16,744,745-16,750,330 | - | C2H3g17688 | CX3g025501 | LOC_Os03g32050 | Os03g0434800 | - | Detail |
| C1H3g11869 | 3:16,771,985-16,773,150 | + | C2H3g17788 | CX3g026054 | LOC_Os03g32100 | Os03g0435300 | - | Detail |
| C1H3g02344 | 3:16,784,611-16,785,290 | + | - | - | - | - | - | Detail |
| C1H3g24690 | 3:16,797,335-16,799,073 | + | - | - | - | - | - | Detail |
| C1H3g30531 | 3:16,800,466-16,800,726 | + | - | - | - | - | - | Detail |
| C1H3g01722 | 3:16,812,880-16,816,178 | - | C2H3g20838 | CX3g027499 | LOC_Os03g32150 | Os03g0435900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g18011 | 12:117,237-117,514 | + | - | - | - | Os12g0101600 | WOX3, OsWOX3, OsNS, OsPRS | Detail |
| C2H12g20048 | 12:126,360-140,768 | + | C1H12g12488 | CX12g015600 | LOC_Os12g01140 | Os12g0101800 | OsNPH1a, OsPHOT1b | Detail |
| C2H12g15714 | 12:145,972-148,665 | + | C1H12g09986 | CX12g018399 | LOC_Os12g01160 | Os12g0102100 | - | Detail |
| C2H12g02013 | 12:150,090-153,083 | + | C1H12g25436 | CX12g017181 | LOC_Os12g01170 | Os12g0102200 | - | Detail |
| C2H12g29482 | 12:153,528-157,192 | - | C1H11g00951 | CX12g018802 | LOC_Os12g01180 | Os12g0102350 | - | Detail |
| C2H12g07971 | 12:160,213-167,008 | + | C1H12g28474 | CX12g017806 | LOC_Os12g01190 | Os12g0102400 | OsRINGC2-2 | Detail |
| C2H12g27539 | 12:167,106-174,661 | - | C1H12g06345 | CX12g018387 | LOC_Os12g01200 | Os12g0102500 | - | Detail |
| C2H12g11186 | 12:183,063-185,171 | + | C1H12g01531 | CX12g018791 | LOC_Os12g01210 | Os12g0102600 | - | Detail |
| C2H12g00217 | 12:183,540-185,171 | + | C1H12g01531 | CX12g018791 | LOC_Os12g01210 | Os12g0102600 | - | Detail |
| C2H12g27482 | 12:185,347-190,444 | - | C1H12g22834 | CX12g016067 | LOC_Os12g01220 | Os12g0102700 | - | Detail |
| C2H12g29309 | 12:190,651-193,195 | + | C1H12g08323 | CX12g015478 | LOC_Os12g01230 | Os12g0102900 | - | Detail |
| C2H12g06286 | 12:206,244-211,176 | - | C1H12g30443 | CX12g017122 | LOC_Os12g01240 | Os12g0103000 | - | Detail |
| C2H12g09673 | 12:218,639-220,016 | + | C1H12g16522 | CX12g017647 | LOC_Os12g01250 | Os12g0103150 | - | Detail |
| C2H12g24208 | 12:245,827-250,994 | + | C1H12g07188 | CX12g015572 | LOC_Os12g01360 | Os12g0104300 | - | Detail |
| C2H12g07052 | 12:251,841-254,905 | - | C1H12g08293 | CX12g015174 | LOC_Os12g01370 | Os12g0104400 | - | Detail |
| C2H12g00110 | 12:277,207-282,362 | + | C1H12g04111 | CX12g017889 | LOC_Os12g01380 | Os12g0104700 | - | Detail |
| C2H12g02913 | 12:284,905-295,299 | + | C1H12g25419 | CX12g015577 | LOC_Os12g01390 | Os12g0104800 | - | Detail |
| C2H12g08249 | 12:298,791-301,579 | + | C1H11g12710 | CX12g016366 | LOC_Os12g01410 | Os12g0193800 | - | Detail |
| C2H12g14287 | 12:304,408-306,384 | - | C1H12g09737 | CX12g017835 | LOC_Os12g01430 | Os12g0105200 | - | Detail |
| C2H12g09075 | 12:307,386-311,931 | - | C1H12g16869 | CX12g016242 | LOC_Os12g01449 | Os12g0105300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |