| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g02815 | 3:16,130,550-16,134,927 | + | C2H3g06341 | CX3g030906 | LOC_Os03g31000 | Os03g0424000 | - | Detail |
| C1H3g00527 | 3:16,136,354-16,137,842 | + | C2H3g06341 | CX3g030906 | LOC_Os03g31000 | Os03g0424200 | - | Detail |
| C1H3g12825 | 3:16,139,570-16,144,126 | + | C2H3g24636 | CX3g027986 | LOC_Os03g31010 | Os03g0423800 | - | Detail |
| C1H3g17862 | 3:16,147,826-16,154,065 | - | C2H3g06341 | CX3g028309 | LOC_Os03g31044 | Os03g0424000 | - | Detail |
| C1H3g03536 | 3:16,204,969-16,205,398 | + | C2H3g29625 | CX3g028983 | - | Os03g0424300 | - | Detail |
| C1H3g03549 | 3:16,206,760-16,213,888 | + | C2H3g29941 | CX3g026843 | LOC_Os03g31090 | Os03g0424800 | - | Detail |
| C1H3g27057 | 3:16,211,973-16,217,082 | - | - | CX3g028435 | LOC_Os03g32190 | Os03g0424600 | - | Detail |
| C1H3g15507 | 3:16,228,835-16,230,254 | + | C2H3g29941 | CX9g057750 | LOC_Os03g31090 | Os03g0424500 | - | Detail |
| C1H3g06288 | 3:16,233,844-16,237,189 | + | C2H3g02070 | CX3g026843 | LOC_Os03g31150 | Os03g0425000 | - | Detail |
| C1H3g23569 | 3:16,237,760-16,240,886 | - | C2H3g13373 | CX3g026358 | LOC_Os03g31170 | Os03g0425200 | - | Detail |
| C1H3g07104 | 3:16,247,215-16,253,043 | + | C2H3g29562 | CX3g025115 | LOC_Os03g31180 | Os03g0425300 | - | Detail |
| C1H3g07332 | 3:16,258,508-16,260,378 | + | C2H3g24938 | CX3g030946 | LOC_Os03g31210 | Os03g0425600 | - | Detail |
| C1H3g20426 | 3:16,272,767-16,276,427 | + | C2H3g12524 | CX3g025387 | LOC_Os03g31230 | Os03g0425800 | - | Detail |
| C1H3g22127 | 3:16,295,382-16,299,157 | - | C2H3g01389 | CX3g029401 | LOC_Os03g31260 | Os03g0426300 | - | Detail |
| C1H3g16780 | 3:16,315,519-16,318,741 | + | C2H3g18833 | CX3g025661 | LOC_Os03g31290 | Os03g0426800 | - | Detail |
| C1H3g17321 | 3:16,328,669-16,335,694 | + | C2H3g26583 | CX3g031265 | LOC_Os03g31300 | Os03g0426900 | - | Detail |
| C1H3g18318 | 3:16,362,578-16,364,335 | + | C2H3g22373 | CX3g030459 | LOC_Os03g31360 | Os03g0427300 | - | Detail |
| C1H3g10283 | 3:16,369,867-16,376,963 | + | C2H3g13790 | CX3g031010 | LOC_Os03g31400 | Os03g0427900 | - | Detail |
| C1H3g31158 | 3:16,381,111-16,385,850 | - | C2H3g18509 | CX3g026162 | LOC_Os03g31430 | Os03g0428200 | - | Detail |
| C1H3g02780 | 3:16,442,818-16,445,737 | + | C2H3g05528 | CX3g027331 | LOC_Os03g31490 | Os03g0428800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g17957 | 12:19,825,339-19,828,955 | - | - | - | - | - | - | Detail |
| C2H12g00857 | 12:19,836,424-19,839,405 | - | C1H12g12899 | CX12g015511 | LOC_Os12g38730 | Os12g0576300 | - | Detail |
| C2H12g17120 | 12:19,843,002-19,846,719 | - | C1H12g10259 | CX12g016341 | LOC_Os12g38750 | Os12g0576600 | - | Detail |
| C2H12g04894 | 12:19,854,539-19,857,748 | - | C1H12g21793 | CX12g017028 | LOC_Os12g38760 | Os12g0576700 | - | Detail |
| C2H12g26878 | 12:19,862,311-19,865,959 | - | C1H12g30700 | CX12g016600 | LOC_Os12g38770 | Os12g0576750 | PAP1B, OsPAP1b, NPP2, OsNPP2 | Detail |
| C2H12g26810 | 12:19,867,353-19,873,882 | - | C1H12g05519 | CX12g017595 | LOC_Os12g38780 | Os12g0576900 | - | Detail |
| C2H12g06238 | 12:19,875,946-19,878,170 | + | C1H12g22000 | CX12g017201 | LOC_Os12g38790 | Os12g0577000 | - | Detail |
| C2H12g22098 | 12:19,879,316-19,887,066 | + | C1H12g15638 | CX12g016939 | LOC_Os12g38800 | Os12g0577100 | - | Detail |
| C2H12g08874 | 12:19,892,972-19,894,012 | + | C1H12g30406 | CX12g017608 | LOC_Os12g38810 | Os12g0577200 | - | Detail |
| C2H12g22738 | 12:19,915,029-19,920,428 | + | C1H12g21439 | CX12g015208 | LOC_Os12g38850 | Os12g0577600 | - | Detail |
| C2H12g29158 | 12:19,921,945-19,924,327 | - | C1H12g00519 | CX12g018076 | LOC_Os12g38860 | Os12g0577700 | - | Detail |
| C2H12g06115 | 12:19,928,181-19,934,490 | - | C1H12g00369 | CX12g015574 | LOC_Os12g38870 | Os12g0577800 | - | Detail |
| C2H12g21149 | 12:19,948,275-19,950,104 | - | C1H12g31425 | CX12g017526 | LOC_Os12g38880 | Os12g0578000 | - | Detail |
| C2H12g11743 | 12:19,951,241-19,951,904 | + | C1H12g00225 | CX12g015487 | - | Os12g0530100 | - | Detail |
| C2H12g17013 | 12:19,954,198-19,958,515 | + | C1H12g19103 | CX12g016002 | LOC_Os12g38900 | Os12g0578200 | - | Detail |
| C2H12g27102 | 12:19,961,689-19,962,201 | + | C1H12g25977 | CX12g018018 | LOC_Os12g38910 | Os12g0578300 | - | Detail |
| C2H12g04289 | 12:19,962,292-19,966,033 | + | C1H12g25977 | CX12g018018 | LOC_Os12g38910 | Os12g0578300 | - | Detail |
| C2H12g06963 | 12:19,966,563-19,970,812 | + | C1H12g22422 | CX12g017088 | LOC_Os12g38920 | Os12g0578400 | - | Detail |
| C2H12g18495 | 12:19,971,081-19,976,738 | - | C1H12g15232 | CX12g016623 | LOC_Os12g38930 | Os12g0578500 | - | Detail |
| C2H12g09933 | 12:19,980,215-19,981,300 | - | C1H12g27740 | CX12g015550 | LOC_Os12g38940 | Os12g0578600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |