| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g02815 | 3:16,130,550-16,134,927 | + | C2H3g06341 | CX3g030906 | LOC_Os03g31000 | Os03g0424000 | - | Detail |
| C1H3g00527 | 3:16,136,354-16,137,842 | + | C2H3g06341 | CX3g030906 | LOC_Os03g31000 | Os03g0424200 | - | Detail |
| C1H3g12825 | 3:16,139,570-16,144,126 | + | C2H3g24636 | CX3g027986 | LOC_Os03g31010 | Os03g0423800 | - | Detail |
| C1H3g17862 | 3:16,147,826-16,154,065 | - | C2H3g06341 | CX3g028309 | LOC_Os03g31044 | Os03g0424000 | - | Detail |
| C1H3g03536 | 3:16,204,969-16,205,398 | + | C2H3g29625 | CX3g028983 | - | Os03g0424300 | - | Detail |
| C1H3g03549 | 3:16,206,760-16,213,888 | + | C2H3g29941 | CX3g026843 | LOC_Os03g31090 | Os03g0424800 | - | Detail |
| C1H3g27057 | 3:16,211,973-16,217,082 | - | - | CX3g028435 | LOC_Os03g32190 | Os03g0424600 | - | Detail |
| C1H3g15507 | 3:16,228,835-16,230,254 | + | C2H3g29941 | CX9g057750 | LOC_Os03g31090 | Os03g0424500 | - | Detail |
| C1H3g06288 | 3:16,233,844-16,237,189 | + | C2H3g02070 | CX3g026843 | LOC_Os03g31150 | Os03g0425000 | - | Detail |
| C1H3g23569 | 3:16,237,760-16,240,886 | - | C2H3g13373 | CX3g026358 | LOC_Os03g31170 | Os03g0425200 | - | Detail |
| C1H3g07104 | 3:16,247,215-16,253,043 | + | C2H3g29562 | CX3g025115 | LOC_Os03g31180 | Os03g0425300 | - | Detail |
| C1H3g07332 | 3:16,258,508-16,260,378 | + | C2H3g24938 | CX3g030946 | LOC_Os03g31210 | Os03g0425600 | - | Detail |
| C1H3g20426 | 3:16,272,767-16,276,427 | + | C2H3g12524 | CX3g025387 | LOC_Os03g31230 | Os03g0425800 | - | Detail |
| C1H3g22127 | 3:16,295,382-16,299,157 | - | C2H3g01389 | CX3g029401 | LOC_Os03g31260 | Os03g0426300 | - | Detail |
| C1H3g16780 | 3:16,315,519-16,318,741 | + | C2H3g18833 | CX3g025661 | LOC_Os03g31290 | Os03g0426800 | - | Detail |
| C1H3g17321 | 3:16,328,669-16,335,694 | + | C2H3g26583 | CX3g031265 | LOC_Os03g31300 | Os03g0426900 | - | Detail |
| C1H3g18318 | 3:16,362,578-16,364,335 | + | C2H3g22373 | CX3g030459 | LOC_Os03g31360 | Os03g0427300 | - | Detail |
| C1H3g10283 | 3:16,369,867-16,376,963 | + | C2H3g13790 | CX3g031010 | LOC_Os03g31400 | Os03g0427900 | - | Detail |
| C1H3g31158 | 3:16,381,111-16,385,850 | - | C2H3g18509 | CX3g026162 | LOC_Os03g31430 | Os03g0428200 | - | Detail |
| C1H3g02780 | 3:16,442,818-16,445,737 | + | C2H3g05528 | CX3g027331 | LOC_Os03g31490 | Os03g0428800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H11g11863 | 11:19,117,603-19,121,425 | + | C1H11g01914 | CX11g011357 | LOC_Os11g36440 | Os11g0572700 | OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO | Detail |
| C2H11g13422 | 11:19,125,558-19,127,963 | - | C1H11g18936 | CX11g011222 | LOC_Os11g36450 | Os11g0572800 | JMJ710 | Detail |
| C2H11g26770 | 11:19,130,769-19,137,484 | - | C1H11g19358 | CX11g010869 | LOC_Os11g36880 | - | - | Detail |
| C2H11g29389 | 11:19,138,250-19,142,658 | - | C1H11g13497 | CX11g010869 | LOC_Os11g36890 | Os11g0577350 | - | Detail |
| C2H11g06789 | 11:19,147,613-19,163,472 | - | C1H11g26977 | CX11g013093 | LOC_Os11g36470 | Os11g0573000 | - | Detail |
| C2H11g21322 | 11:19,169,026-19,172,428 | + | C1H11g26926 | CX11g011761 | LOC_Os11g36480 | Os11g0573200 | - | Detail |
| C2H11g10839 | 11:19,197,783-19,200,808 | + | C1H11g24728 | CX11g011586 | LOC_Os11g36740 | Os11g0575900 | - | Detail |
| C2H11g22993 | 11:19,213,454-19,215,976 | + | - | CX11g013980 | LOC_Os11g36760 | Os11g0576100 | - | Detail |
| C2H11g27642 | 11:19,236,348-19,238,024 | + | C1H11g28846 | CX11g010880 | LOC_Os11g36790 | Os11g0576400 | - | Detail |
| C2H11g01112 | 11:19,245,667-19,251,021 | + | C1H11g25490 | CX11g011986 | LOC_Os11g36930 | Os11g0577700 | - | Detail |
| C2H11g02749 | 11:19,252,164-19,253,651 | + | C1H11g20417 | CX11g012965 | LOC_Os11g36940 | Os11g0577800 | - | Detail |
| C2H11g17082 | 11:19,254,574-19,258,082 | + | C1H11g23616 | CX11g014373 | LOC_Os11g36950 | - | - | Detail |
| C2H11g11502 | 11:19,259,245-19,259,987 | + | - | - | - | - | - | Detail |
| C2H11g22955 | 11:19,266,832-19,269,990 | + | C1H11g07221 | CX11g012558 | LOC_Os11g36960 | Os11g0578100 | - | Detail |
| C2H11g13105 | 11:19,281,747-19,284,724 | + | C1H11g04768 | CX11g012558 | LOC_Os11g36960 | Os11g0578225 | - | Detail |
| C2H11g08275 | 11:19,292,554-19,297,955 | + | C1H11g25485 | CX11g012558 | LOC_Os11g36560 | Os11g0578225 | - | Detail |
| C2H11g04234 | 11:19,303,003-19,303,613 | + | C1H11g25485 | CX11g012558 | LOC_Os11g36960 | Os11g0578250 | - | Detail |
| C2H11g04331 | 11:19,318,934-19,323,956 | + | C1H11g28830 | CX11g012546 | LOC_Os11g36520 | Os11g0578500 | - | Detail |
| C2H11g16636 | 11:19,328,125-19,329,357 | + | C1H11g25206 | CX11g012020 | LOC_Os11g37010 | Os11g0578700 | - | Detail |
| C2H11g25259 | 11:19,345,087-19,349,361 | + | C1H11g10451 | CX11g012003 | LOC_Os11g37050 | Os11g0579200 | ctp-1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |