| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13446 | 3:15,441,855-15,444,790 | + | C2H3g28547 | CX3g026824 | LOC_Os03g29810 | Os03g0411500 | VYL, OsClpP6, ClpP6, CLP6 | Detail |
| C1H3g17384 | 3:15,446,063-15,447,888 | + | C2H3g05086 | CX3g028485 | LOC_Os03g29830 | Os03g0411600 | - | Detail |
| C1H3g16278 | 3:15,454,788-15,458,812 | - | C2H3g03300 | CX3g026254 | LOC_Os03g29850 | Os03g0411800 | - | Detail |
| C1H3g01152 | 3:15,493,558-15,497,840 | + | C2H3g18598 | CX3g025249 | LOC_Os03g29910 | Os03g0412200 | - | Detail |
| C1H3g29513 | 3:15,504,089-15,505,016 | + | C2H3g25598 | CX3g027118 | LOC_Os03g29920 | Os03g0412300 | - | Detail |
| C1H3g14020 | 3:15,509,912-15,510,796 | - | C2H3g13302 | CX3g026464 | LOC_Os03g29930 | Os03g0412400 | - | Detail |
| C1H3g23937 | 3:15,529,629-15,536,720 | + | C2H3g28011 | CX3g026817 | LOC_Os03g29950 | Os03g0412800 | - | Detail |
| C1H3g13193 | 3:15,550,436-15,557,135 | + | C2H3g06222 | CX3g030482 | LOC_Os03g29960 | Os03g0412900 | - | Detail |
| C1H3g10486 | 3:15,568,207-15,572,329 | + | C2H3g21811 | CX3g029713 | LOC_Os03g29980 | Os03g0413100 | - | Detail |
| C1H3g17935 | 3:15,580,436-15,586,269 | - | C2H3g29744 | CX3g028183 | LOC_Os03g30000 | Os03g0413400 | - | Detail |
| C1H3g29820 | 3:15,619,439-15,620,660 | + | - | - | - | Os03g0414200 | - | Detail |
| C1H3g00999 | 3:15,637,124-15,638,153 | - | - | CX3g027342 | LOC_Os03g30092 | Os03g0414400 | OsHCF222 | Detail |
| C1H3g09941 | 3:15,669,135-15,669,926 | + | C2H3g13977 | CX3g026035 | LOC_Os03g30120 | Os03g0414900 | - | Detail |
| C1H3g17098 | 3:15,678,936-15,682,018 | - | C2H3g10779 | CX3g031360 | LOC_Os03g30130 | Os03g0415200 | - | Detail |
| C1H3g25399 | 3:15,692,516-15,692,890 | + | C2H3g22648 | - | - | - | - | Detail |
| C1H3g19128 | 3:15,693,759-15,694,121 | + | C2H3g22648 | CX3g028346 | LOC_Os03g30220 | Os03g0415600 | - | Detail |
| C1H3g23999 | 3:15,694,401-15,695,009 | + | C2H3g22648 | CX3g028346 | LOC_Os03g30220 | Os03g0415700 | - | Detail |
| C1H3g25355 | 3:15,705,622-15,707,536 | + | C2H3g10116 | CX3g025881 | LOC_Os03g30250 | Os03g0416200 | - | Detail |
| C1H3g20080 | 3:15,707,813-15,711,121 | - | C2H3g04729 | CX3g027193 | LOC_Os03g30260 | Os03g0416300 | OsBC1L2 | Detail |
| C1H3g12535 | 3:15,723,016-15,727,423 | - | C2H3g26266 | CX3g030769 | LOC_Os03g30300 | Os03g0416500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g13454 | 4:17,131,561-17,132,205 | + | C1H4g28128 | CX4g034784 | LOC_Os04g33290 | - | - | Detail |
| C2H4g13060 | 4:17,135,595-17,138,489 | + | C1H4g08917 | CX4g033122 | LOC_Os04g33300 | Os04g0405800 | - | Detail |
| C2H4g03472 | 4:17,139,962-17,141,630 | - | C1H4g24026 | CX4g032232 | LOC_Os04g33310 | Os04g0405900 | - | Detail |
| C2H4g07196 | 4:17,162,153-17,162,389 | - | C1H4g30658 | - | - | - | - | Detail |
| C2H4g21779 | 4:17,165,544-17,166,778 | - | C1H4g14696 | - | LOC_Os04g33330 | Os04g0407300 | - | Detail |
| C2H4g19229 | 4:17,178,712-17,179,848 | + | C1H4g11703 | CX4g034898 | LOC_Os04g33360 | Os04g0407800 | - | Detail |
| C2H4g17180 | 4:17,209,629-17,210,969 | - | C1H4g12008 | CX4g034577 | LOC_Os04g33450 | Os04g0408600 | - | Detail |
| C2H4g24924 | 4:17,212,760-17,213,953 | - | C1H4g11861 | CX4g033600 | LOC_Os04g33440 | Os04g0408700 | - | Detail |
| C2H4g01925 | 4:17,217,193-17,219,817 | - | C1H4g11809 | CX4g033600 | LOC_Os04g33420 | Os04g0408900 | - | Detail |
| C2H4g16116 | 4:17,222,031-17,223,967 | - | C1H4g28635 | CX4g036549 | LOC_Os04g33400 | Os04g0409100 | - | Detail |
| C2H4g00586 | 4:17,225,867-17,234,927 | - | C1H4g20347 | CX4g035756 | LOC_Os04g33460 | Os04g0409200 | OsBEIIa, OsSBE4, RBE4 | Detail |
| C2H4g11616 | 4:17,236,738-17,240,920 | - | C1H4g12620 | CX4g033786 | LOC_Os04g33470 | Os04g0409500 | - | Detail |
| C2H4g17999 | 4:17,241,061-17,246,648 | + | C1H4g14413 | CX4g032352 | LOC_Os04g33480 | Os04g0409600 | DSL1, OsHDA711 | Detail |
| C2H4g14351 | 4:17,247,219-17,249,964 | + | C1H4g17013 | CX4g032016 | LOC_Os04g33490 | Os04g0409900 | - | Detail |
| C2H4g05689 | 4:17,250,417-17,254,467 | - | C1H4g22622 | CX4g034768 | LOC_Os04g33500 | Os04g0410200 | - | Detail |
| C2H4g27427 | 4:17,266,785-17,268,844 | + | C1H4g23649 | CX4g031458 | LOC_Os04g33510 | Os04g0410300 | - | Detail |
| C2H4g01491 | 4:17,270,029-17,271,235 | + | C1H4g05147 | CX4g034502 | LOC_Os04g33520 | Os04g0410400 | - | Detail |
| C2H4g21488 | 4:17,272,204-17,272,694 | + | C1H4g10509 | - | - | - | - | Detail |
| C2H4g29020 | 4:17,273,340-17,275,048 | - | C1H4g28526 | CX4g032279 | LOC_Os04g33530 | Os04g0410600 | - | Detail |
| C2H4g02433 | 4:17,291,858-17,292,221 | - | C1H4g10207 | - | - | Os04g0411100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |