| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13446 | 3:15,441,855-15,444,790 | + | C2H3g28547 | CX3g026824 | LOC_Os03g29810 | Os03g0411500 | VYL, OsClpP6, ClpP6, CLP6 | Detail |
| C1H3g17384 | 3:15,446,063-15,447,888 | + | C2H3g05086 | CX3g028485 | LOC_Os03g29830 | Os03g0411600 | - | Detail |
| C1H3g16278 | 3:15,454,788-15,458,812 | - | C2H3g03300 | CX3g026254 | LOC_Os03g29850 | Os03g0411800 | - | Detail |
| C1H3g01152 | 3:15,493,558-15,497,840 | + | C2H3g18598 | CX3g025249 | LOC_Os03g29910 | Os03g0412200 | - | Detail |
| C1H3g29513 | 3:15,504,089-15,505,016 | + | C2H3g25598 | CX3g027118 | LOC_Os03g29920 | Os03g0412300 | - | Detail |
| C1H3g14020 | 3:15,509,912-15,510,796 | - | C2H3g13302 | CX3g026464 | LOC_Os03g29930 | Os03g0412400 | - | Detail |
| C1H3g23937 | 3:15,529,629-15,536,720 | + | C2H3g28011 | CX3g026817 | LOC_Os03g29950 | Os03g0412800 | - | Detail |
| C1H3g13193 | 3:15,550,436-15,557,135 | + | C2H3g06222 | CX3g030482 | LOC_Os03g29960 | Os03g0412900 | - | Detail |
| C1H3g10486 | 3:15,568,207-15,572,329 | + | C2H3g21811 | CX3g029713 | LOC_Os03g29980 | Os03g0413100 | - | Detail |
| C1H3g17935 | 3:15,580,436-15,586,269 | - | C2H3g29744 | CX3g028183 | LOC_Os03g30000 | Os03g0413400 | - | Detail |
| C1H3g29820 | 3:15,619,439-15,620,660 | + | - | - | - | Os03g0414200 | - | Detail |
| C1H3g00999 | 3:15,637,124-15,638,153 | - | - | CX3g027342 | LOC_Os03g30092 | Os03g0414400 | OsHCF222 | Detail |
| C1H3g09941 | 3:15,669,135-15,669,926 | + | C2H3g13977 | CX3g026035 | LOC_Os03g30120 | Os03g0414900 | - | Detail |
| C1H3g17098 | 3:15,678,936-15,682,018 | - | C2H3g10779 | CX3g031360 | LOC_Os03g30130 | Os03g0415200 | - | Detail |
| C1H3g25399 | 3:15,692,516-15,692,890 | + | C2H3g22648 | - | - | - | - | Detail |
| C1H3g19128 | 3:15,693,759-15,694,121 | + | C2H3g22648 | CX3g028346 | LOC_Os03g30220 | Os03g0415600 | - | Detail |
| C1H3g23999 | 3:15,694,401-15,695,009 | + | C2H3g22648 | CX3g028346 | LOC_Os03g30220 | Os03g0415700 | - | Detail |
| C1H3g25355 | 3:15,705,622-15,707,536 | + | C2H3g10116 | CX3g025881 | LOC_Os03g30250 | Os03g0416200 | - | Detail |
| C1H3g20080 | 3:15,707,813-15,711,121 | - | C2H3g04729 | CX3g027193 | LOC_Os03g30260 | Os03g0416300 | OsBC1L2 | Detail |
| C1H3g12535 | 3:15,723,016-15,727,423 | - | C2H3g26266 | CX3g030769 | LOC_Os03g30300 | Os03g0416500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g20692 | 2:3,060,464-3,065,717 | - | C1H2g17118 | CX2g021601 | LOC_Os02g06920 | Os02g0165000 | - | Detail |
| C2H2g16079 | 2:3,069,988-3,072,529 | + | C1H2g01650 | CX2g019152 | LOC_Os02g06930 | Os02g0165100 | - | Detail |
| C2H2g27607 | 2:3,155,405-3,158,804 | + | C1H2g23632 | CX2g024294 | LOC_Os02g07040 | Os02g0167000 | - | Detail |
| C2H2g29468 | 2:3,159,767-3,162,381 | + | C1H2g16723 | CX2g019411 | LOC_Os02g07044 | Os02g0167100 | - | Detail |
| C2H2g18240 | 2:3,168,991-3,171,917 | + | C1H2g27502 | CX2g022042 | LOC_Os02g07060 | Os02g0167300 | - | Detail |
| C2H2g24332 | 2:3,172,966-3,180,822 | - | C1H2g31793 | CX2g021350 | LOC_Os02g07070 | Os02g0167500 | LowAC1 | Detail |
| C2H2g21001 | 2:3,202,475-3,202,852 | + | C1H2g24765 | CX2g022899 | LOC_Os02g07110 | Os02g0445100 | - | Detail |
| C2H2g11696 | 2:3,206,702-3,216,701 | - | C1H2g25293 | CX2g021417 | LOC_Os02g07120 | Os02g0167700 | OsCAND1 | Detail |
| C2H2g19465 | 2:3,223,262-3,225,187 | - | C1H2g15991 | CX2g019496 | LOC_Os02g07160 | Os02g0168100 | OsHPPD | Detail |
| C2H2g21644 | 2:3,230,343-3,231,965 | - | C1H2g12427 | CX2g021826 | LOC_Os02g07170 | Os02g0168200 | - | Detail |
| C2H2g14957 | 2:3,235,166-3,238,330 | + | C1H2g27005 | CX2g022739 | LOC_Os02g07180 | Os02g0168300 | - | Detail |
| C2H2g15308 | 2:3,242,519-3,247,680 | + | C1H2g17697 | CX2g023861 | LOC_Os02g07190 | Os02g0168400 | - | Detail |
| C2H2g27598 | 2:3,249,548-3,251,603 | + | C1H2g15097 | CX2g019993 | LOC_Os02g07200 | Os02g0168500 | - | Detail |
| C2H2g30613 | 2:3,252,757-3,255,389 | - | C1H2g02992 | CX2g020274 | LOC_Os02g07210 | Os02g0168600 | - | Detail |
| C2H2g22535 | 2:3,259,890-3,261,785 | - | C1H2g24249 | CX2g022989 | LOC_Os02g07220 | Os02g0168700 | - | Detail |
| C2H2g29143 | 2:3,263,601-3,266,496 | + | C1H2g16743 | CX2g019641 | LOC_Os02g07230 | Os02g0168800 | - | Detail |
| C2H2g05298 | 2:3,267,042-3,268,348 | - | C1H2g05199 | CX2g023253 | LOC_Os02g07240 | Os02g0168900 | - | Detail |
| C2H2g28592 | 2:3,269,187-3,272,882 | - | C1H2g08763 | CX2g023357 | LOC_Os02g07250 | Os02g0169000 | - | Detail |
| C2H2g19444 | 2:3,276,297-3,280,134 | + | C1H2g16238 | CX2g020247 | LOC_Os02g07260 | Os02g0169300 | - | Detail |
| C2H2g02121 | 2:3,287,961-3,294,924 | - | C1H2g08697 | CX2g023065 | LOC_Os02g07310 | Os02g0169400 | OsAGO17 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |