| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13446 | 3:15,441,855-15,444,790 | + | C2H3g28547 | CX3g026824 | LOC_Os03g29810 | Os03g0411500 | VYL, OsClpP6, ClpP6, CLP6 | Detail |
| C1H3g17384 | 3:15,446,063-15,447,888 | + | C2H3g05086 | CX3g028485 | LOC_Os03g29830 | Os03g0411600 | - | Detail |
| C1H3g16278 | 3:15,454,788-15,458,812 | - | C2H3g03300 | CX3g026254 | LOC_Os03g29850 | Os03g0411800 | - | Detail |
| C1H3g01152 | 3:15,493,558-15,497,840 | + | C2H3g18598 | CX3g025249 | LOC_Os03g29910 | Os03g0412200 | - | Detail |
| C1H3g29513 | 3:15,504,089-15,505,016 | + | C2H3g25598 | CX3g027118 | LOC_Os03g29920 | Os03g0412300 | - | Detail |
| C1H3g14020 | 3:15,509,912-15,510,796 | - | C2H3g13302 | CX3g026464 | LOC_Os03g29930 | Os03g0412400 | - | Detail |
| C1H3g23937 | 3:15,529,629-15,536,720 | + | C2H3g28011 | CX3g026817 | LOC_Os03g29950 | Os03g0412800 | - | Detail |
| C1H3g13193 | 3:15,550,436-15,557,135 | + | C2H3g06222 | CX3g030482 | LOC_Os03g29960 | Os03g0412900 | - | Detail |
| C1H3g10486 | 3:15,568,207-15,572,329 | + | C2H3g21811 | CX3g029713 | LOC_Os03g29980 | Os03g0413100 | - | Detail |
| C1H3g17935 | 3:15,580,436-15,586,269 | - | C2H3g29744 | CX3g028183 | LOC_Os03g30000 | Os03g0413400 | - | Detail |
| C1H3g29820 | 3:15,619,439-15,620,660 | + | - | - | - | Os03g0414200 | - | Detail |
| C1H3g00999 | 3:15,637,124-15,638,153 | - | - | CX3g027342 | LOC_Os03g30092 | Os03g0414400 | OsHCF222 | Detail |
| C1H3g09941 | 3:15,669,135-15,669,926 | + | C2H3g13977 | CX3g026035 | LOC_Os03g30120 | Os03g0414900 | - | Detail |
| C1H3g17098 | 3:15,678,936-15,682,018 | - | C2H3g10779 | CX3g031360 | LOC_Os03g30130 | Os03g0415200 | - | Detail |
| C1H3g25399 | 3:15,692,516-15,692,890 | + | C2H3g22648 | - | - | - | - | Detail |
| C1H3g19128 | 3:15,693,759-15,694,121 | + | C2H3g22648 | CX3g028346 | LOC_Os03g30220 | Os03g0415600 | - | Detail |
| C1H3g23999 | 3:15,694,401-15,695,009 | + | C2H3g22648 | CX3g028346 | LOC_Os03g30220 | Os03g0415700 | - | Detail |
| C1H3g25355 | 3:15,705,622-15,707,536 | + | C2H3g10116 | CX3g025881 | LOC_Os03g30250 | Os03g0416200 | - | Detail |
| C1H3g20080 | 3:15,707,813-15,711,121 | - | C2H3g04729 | CX3g027193 | LOC_Os03g30260 | Os03g0416300 | OsBC1L2 | Detail |
| C1H3g12535 | 3:15,723,016-15,727,423 | - | C2H3g26266 | CX3g030769 | LOC_Os03g30300 | Os03g0416500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g04845 | 2:379,563-381,366 | + | - | - | - | - | - | Detail |
| C2H2g06927 | 2:381,459-383,622 | + | C1H2g01388 | CX2g020261 | LOC_Os02g01760 | Os02g0109100 | - | Detail |
| C2H2g00247 | 2:383,739-387,335 | - | C1H2g24556 | CX2g024227 | LOC_Os02g01790 | Os02g0107600 | - | Detail |
| C2H2g20623 | 2:393,931-397,469 | + | C1H2g11466 | CX2g024551 | LOC_Os02g01800 | Os02g0157501 | - | Detail |
| C2H2g07723 | 2:399,781-401,331 | - | C1H2g28236 | - | LOC_Os02g01810 | Os02g0107800 | - | Detail |
| C2H2g18805 | 2:402,966-406,280 | - | C1H2g30849 | CX2g024881 | LOC_Os02g01820 | Os02g0107900 | - | Detail |
| C2H2g24315 | 2:411,095-411,721 | - | C1H2g15653 | - | LOC_Os02g01830 | Os02g0108000 | - | Detail |
| C2H2g10455 | 2:412,429-412,719 | - | C1H2g27642 | - | - | - | - | Detail |
| C2H2g03208 | 2:422,454-423,810 | - | C1H2g05379 | - | LOC_Os02g01850 | - | - | Detail |
| C2H2g02670 | 2:433,998-435,157 | + | C1H2g22453 | CX2g024227 | LOC_Os02g01870 | Os02g0108400 | - | Detail |
| C2H2g06299 | 2:435,199-435,480 | + | C1H2g28514 | CX2g023740 | LOC_Os02g01870 | Os02g0108400 | - | Detail |
| C2H2g20092 | 2:438,386-439,601 | + | C1H2g04382 | CX2g024029 | LOC_Os02g01880 | Os02g0108700 | - | Detail |
| C2H2g13992 | 2:443,153-444,725 | + | C1H2g07981 | CX2g023740 | LOC_Os02g01900 | Os02g0108900 | - | Detail |
| C2H2g18943 | 2:445,702-446,317 | - | C1H2g00678 | - | - | Os02g0107350 | - | Detail |
| C2H2g24760 | 2:447,383-451,214 | - | C1H2g06576 | CX2g024776 | LOC_Os02g01760 | Os02g0109100 | - | Detail |
| C2H2g08763 | 2:461,178-469,329 | - | C1H2g03897 | CX2g022838 | LOC_Os02g01940 | Os02g0109501 | - | Detail |
| C2H2g05649 | 2:470,676-474,014 | - | C1H2g21485 | CX2g024005 | LOC_Os02g01960 | Os02g0109800 | - | Detail |
| C2H2g02525 | 2:477,511-482,235 | + | C1H2g27232 | CX2g022604 | LOC_Os02g01970 | Os02g0109900 | - | Detail |
| C2H2g23609 | 2:483,377-485,309 | - | C1H2g26662 | CX2g021160 | LOC_Os02g01980 | Os02g0110000 | - | Detail |
| C2H2g18278 | 2:486,680-488,237 | - | C1H2g03385 | CX2g019661 | LOC_Os02g01990 | Os02g0110100 | DHD4 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |