| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g14233 | 3:15,156,613-15,160,158 | + | C2H3g00155 | CX3g025201 | LOC_Os03g29260 | Os03g0406200 | - | Detail |
| C1H3g04639 | 3:15,163,503-15,164,632 | - | - | CX3g028493 | LOC_Os03g29270 | Os07g0614400 | qSOR1, DRL1 | Detail |
| C1H3g19733 | 3:15,193,201-15,193,658 | - | - | - | - | - | - | Detail |
| C1H3g31034 | 3:15,218,594-15,221,494 | + | C2H3g23059 | CX3g026877 | LOC_Os03g29340 | Os03g0406900 | OsMac4 | Detail |
| C1H3g30818 | 3:15,221,494-15,229,802 | - | C2H3g26359 | CX3g030450 | LOC_Os03g29350 | Os03g0407000 | - | Detail |
| C1H3g12617 | 3:15,257,670-15,258,152 | - | C2H3g08674 | CX3g026274 | - | Os03g0407400 | GS3 | Detail |
| C1H3g17471 | 3:15,271,293-15,274,630 | - | C2H3g00647 | CX3g025160 | LOC_Os03g29410 | Os03g0407900 | - | Detail |
| C1H3g24666 | 3:15,294,275-15,294,892 | + | - | - | - | - | - | Detail |
| C1H3g04154 | 3:15,299,813-15,300,530 | - | - | - | - | - | - | Detail |
| C1H3g10731 | 3:15,305,209-15,310,040 | + | C2H3g15951 | CX3g027064 | LOC_Os03g29470 | Os03g0408500 | - | Detail |
| C1H3g25797 | 3:15,312,759-15,314,366 | - | C2H3g19711 | CX3g025952 | LOC_Os03g29480 | Os03g0408600 | NSP1, Os NSP1, NSP1 | Detail |
| C1H3g31871 | 3:15,344,118-15,348,167 | - | C2H3g04400 | CX3g026777 | LOC_Os03g29570 | Os03g0409400 | - | Detail |
| C1H3g21807 | 3:15,351,979-15,352,526 | + | C2H3g25735 | CX3g031255 | LOC_Os03g29584 | - | - | Detail |
| C1H3g12159 | 3:15,367,467-15,370,776 | + | C2H3g24065 | CX3g031178 | LOC_Os03g29630 | Os03g0410100 | - | Detail |
| C1H3g23458 | 3:15,380,824-15,382,453 | - | - | - | - | - | - | Detail |
| C1H3g17148 | 3:15,384,360-15,384,704 | - | C2H3g24471 | CX3g026992 | LOC_Os03g29680 | Os03g0410300 | - | Detail |
| C1H3g03774 | 3:15,397,879-15,401,261 | - | C2H3g16726 | CX3g028649 | LOC_Os03g29730 | Os03g0410700 | - | Detail |
| C1H3g16818 | 3:15,401,512-15,403,635 | + | C2H3g26637 | CX3g029764 | LOC_Os03g29740 | Os03g0410900 | - | Detail |
| C1H3g23163 | 3:15,410,176-15,416,321 | + | C2H3g25819 | CX3g026328 | LOC_Os03g29750 | Os03g0411000 | - | Detail |
| C1H3g09595 | 3:15,426,707-15,432,154 | + | C2H3g03408 | CX3g029428 | LOC_Os03g29760 | Os03g0411100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01836 | 3:30,924,677-30,926,561 | - | C1H3g13091 | CX3g028432 | LOC_Os03g59360 | Os03g0808300 | - | Detail |
| C2H3g03811 | 3:30,930,428-30,931,159 | - | C1H3g25091 | CX3g025805 | LOC_Os03g59370 | Os03g0808400 | - | Detail |
| C2H3g04526 | 3:30,939,184-30,943,566 | + | C1H3g20305 | CX3g024996 | LOC_Os03g59390 | Os03g0808600 | OsCPK8 | Detail |
| C2H3g07709 | 3:30,948,608-30,953,298 | + | C1H3g10123 | CX3g029969 | LOC_Os03g59430 | Os03g0808900 | - | Detail |
| C2H3g29438 | 3:30,956,818-30,960,535 | - | C1H3g21680 | CX3g025915 | LOC_Os03g59450 | Os03g0809100 | - | Detail |
| C2H3g20629 | 3:30,961,716-30,964,098 | + | C1H3g00029 | CX3g029386 | LOC_Os03g59460 | Os03g0809200 | - | Detail |
| C2H3g29142 | 3:30,964,838-30,968,457 | - | C1H3g24410 | CX3g030061 | LOC_Os03g59470 | Os03g0809300 | - | Detail |
| C2H3g26798 | 3:30,968,936-30,973,688 | - | C1H3g00154 | CX3g026207 | LOC_Os03g59480 | Os03g0809400 | - | Detail |
| C2H3g14868 | 3:30,978,800-30,983,598 | + | C1H3g24704 | CX3g029129 | LOC_Os03g59530 | Os03g0809700 | - | Detail |
| C2H3g12384 | 3:30,984,222-30,986,692 | - | C1H3g10761 | CX3g029771 | LOC_Os03g59540 | Os03g0809800 | - | Detail |
| C2H3g15000 | 3:30,987,085-30,991,814 | + | C1H3g08226 | CX3g027672 | LOC_Os03g59550 | Os03g0809900 | OsY14b, Y14b, Tsunagi, RBM8 | Detail |
| C2H3g26577 | 3:30,998,064-30,999,122 | + | C1H3g24094 | CX3g030604 | LOC_Os03g59570 | Os03g0810100 | - | Detail |
| C2H3g13200 | 3:31,010,565-31,012,991 | - | C1H3g21092 | CX3g027297 | LOC_Os03g59580 | Os03g0810300 | - | Detail |
| C2H3g12399 | 3:31,020,813-31,026,983 | - | C1H3g11302 | CX3g028362 | LOC_Os03g59590 | Os03g0810600 | - | Detail |
| C2H3g16986 | 3:31,034,680-31,036,544 | - | C1H3g11617 | CX3g030481 | LOC_Os03g59600 | Os03g0810700 | - | Detail |
| C2H3g19706 | 3:31,037,417-31,039,340 | + | C1H3g30674 | CX3g028870 | LOC_Os03g59610 | Os03g0810800 | OsABA2 | Detail |
| C2H3g30149 | 3:31,039,694-31,043,993 | - | C1H3g01412 | CX3g027301 | LOC_Os03g59620 | Os03g0810900 | - | Detail |
| C2H3g14154 | 3:31,045,868-31,052,528 | + | C1H3g18901 | CX3g030819 | LOC_Os03g59640 | Os03g0811100 | - | Detail |
| C2H3g24154 | 3:31,053,028-31,058,031 | + | C1H3g26787 | CX3g031200 | LOC_Os03g59650 | Os03g0811200 | - | Detail |
| C2H3g07522 | 3:31,061,059-31,063,061 | + | C1H3g09735 | CX3g028699 | LOC_Os03g59660 | Os03g0811300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |