| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g14233 | 3:15,156,613-15,160,158 | + | C2H3g00155 | CX3g025201 | LOC_Os03g29260 | Os03g0406200 | - | Detail |
| C1H3g04639 | 3:15,163,503-15,164,632 | - | - | CX3g028493 | LOC_Os03g29270 | Os07g0614400 | qSOR1, DRL1 | Detail |
| C1H3g19733 | 3:15,193,201-15,193,658 | - | - | - | - | - | - | Detail |
| C1H3g31034 | 3:15,218,594-15,221,494 | + | C2H3g23059 | CX3g026877 | LOC_Os03g29340 | Os03g0406900 | OsMac4 | Detail |
| C1H3g30818 | 3:15,221,494-15,229,802 | - | C2H3g26359 | CX3g030450 | LOC_Os03g29350 | Os03g0407000 | - | Detail |
| C1H3g12617 | 3:15,257,670-15,258,152 | - | C2H3g08674 | CX3g026274 | - | Os03g0407400 | GS3 | Detail |
| C1H3g17471 | 3:15,271,293-15,274,630 | - | C2H3g00647 | CX3g025160 | LOC_Os03g29410 | Os03g0407900 | - | Detail |
| C1H3g24666 | 3:15,294,275-15,294,892 | + | - | - | - | - | - | Detail |
| C1H3g04154 | 3:15,299,813-15,300,530 | - | - | - | - | - | - | Detail |
| C1H3g10731 | 3:15,305,209-15,310,040 | + | C2H3g15951 | CX3g027064 | LOC_Os03g29470 | Os03g0408500 | - | Detail |
| C1H3g25797 | 3:15,312,759-15,314,366 | - | C2H3g19711 | CX3g025952 | LOC_Os03g29480 | Os03g0408600 | NSP1, Os NSP1, NSP1 | Detail |
| C1H3g31871 | 3:15,344,118-15,348,167 | - | C2H3g04400 | CX3g026777 | LOC_Os03g29570 | Os03g0409400 | - | Detail |
| C1H3g21807 | 3:15,351,979-15,352,526 | + | C2H3g25735 | CX3g031255 | LOC_Os03g29584 | - | - | Detail |
| C1H3g12159 | 3:15,367,467-15,370,776 | + | C2H3g24065 | CX3g031178 | LOC_Os03g29630 | Os03g0410100 | - | Detail |
| C1H3g23458 | 3:15,380,824-15,382,453 | - | - | - | - | - | - | Detail |
| C1H3g17148 | 3:15,384,360-15,384,704 | - | C2H3g24471 | CX3g026992 | LOC_Os03g29680 | Os03g0410300 | - | Detail |
| C1H3g03774 | 3:15,397,879-15,401,261 | - | C2H3g16726 | CX3g028649 | LOC_Os03g29730 | Os03g0410700 | - | Detail |
| C1H3g16818 | 3:15,401,512-15,403,635 | + | C2H3g26637 | CX3g029764 | LOC_Os03g29740 | Os03g0410900 | - | Detail |
| C1H3g23163 | 3:15,410,176-15,416,321 | + | C2H3g25819 | CX3g026328 | LOC_Os03g29750 | Os03g0411000 | - | Detail |
| C1H3g09595 | 3:15,426,707-15,432,154 | + | C2H3g03408 | CX3g029428 | LOC_Os03g29760 | Os03g0411100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g28547 | 3:15,436,272-15,439,215 | + | C1H3g13446 | CX3g026824 | LOC_Os03g29810 | Os03g0411500 | VYL, OsClpP6, ClpP6, CLP6 | Detail |
| C2H3g05086 | 3:15,440,249-15,442,326 | + | C1H3g17384 | CX3g028485 | LOC_Os03g29830 | Os03g0411600 | - | Detail |
| C2H3g03300 | 3:15,450,268-15,454,284 | - | C1H3g16278 | CX3g026254 | LOC_Os03g29850 | Os03g0411800 | - | Detail |
| C2H3g18598 | 3:15,489,023-15,493,295 | + | C1H3g01152 | CX3g025249 | LOC_Os03g29910 | Os03g0412200 | - | Detail |
| C2H3g25598 | 3:15,499,711-15,500,582 | + | C1H3g29513 | CX3g027118 | LOC_Os03g29920 | Os03g0412300 | - | Detail |
| C2H3g13302 | 3:15,505,473-15,506,357 | - | C1H3g14020 | CX3g026464 | LOC_Os03g29930 | Os03g0412400 | - | Detail |
| C2H3g28011 | 3:15,524,973-15,528,682 | + | C1H3g23937 | CX3g026817 | LOC_Os03g29950 | Os03g0412800 | - | Detail |
| C2H3g06222 | 3:15,533,828-15,540,505 | + | C1H3g13193 | CX3g030482 | LOC_Os03g29960 | Os03g0412900 | - | Detail |
| C2H3g21811 | 3:15,552,691-15,556,814 | + | C1H3g10486 | CX3g029713 | LOC_Os03g29980 | Os03g0413100 | - | Detail |
| C2H3g29744 | 3:15,564,931-15,569,605 | - | C1H3g17935 | CX3g028183 | LOC_Os03g30000 | Os03g0413400 | - | Detail |
| C2H3g28598 | 3:15,615,334-15,615,990 | - | - | - | LOC_Os02g45270 | Os02g0675000 | - | Detail |
| C2H3g13977 | 3:15,640,906-15,641,697 | + | C1H3g09941 | CX3g026035 | LOC_Os03g30120 | Os03g0414900 | - | Detail |
| C2H3g10779 | 3:15,650,778-15,653,866 | - | C1H3g17098 | CX3g031360 | LOC_Os03g30130 | Os03g0415200 | - | Detail |
| C2H3g22648 | 3:15,664,371-15,665,867 | + | C1H3g19128 | CX3g028346 | LOC_Os03g30220 | Os03g0415700 | - | Detail |
| C2H3g10116 | 3:15,676,497-15,678,440 | + | C1H3g25355 | CX3g025881 | LOC_Os03g30250 | Os03g0416200 | - | Detail |
| C2H3g04729 | 3:15,680,781-15,684,112 | - | C1H3g20080 | CX3g027193 | LOC_Os03g30260 | Os03g0416300 | OsBC1L2 | Detail |
| C2H3g26266 | 3:15,696,247-15,700,651 | - | C1H3g12535 | CX3g030769 | LOC_Os03g30300 | Os03g0416500 | - | Detail |
| C2H3g09323 | 3:15,726,493-15,729,007 | + | C1H3g18690 | CX3g029905 | LOC_Os03g28270 | - | - | Detail |
| C2H3g21176 | 3:15,729,847-15,732,340 | + | C1H3g18690 | CX3g029905 | LOC_Os03g28270 | - | - | Detail |
| C2H3g26870 | 3:15,753,249-15,754,898 | - | C1H3g24441 | CX3g026161 | LOC_Os03g30420 | Os03g0417700 | GL3.2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |