| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30084 | 3:14,062,875-14,066,186 | + | C2H3g25165 | CX3g025932 | LOC_Os03g27320 | Os03g0390700 | OsTTL | Detail |
| C1H3g29350 | 3:14,068,181-14,072,011 | + | C2H3g02856 | CX3g027950 | LOC_Os03g27350 | Os03g0391000 | - | Detail |
| C1H3g09929 | 3:14,075,643-14,076,866 | + | C2H3g17457 | CX3g026532 | LOC_Os03g27360 | Os03g0391100 | - | Detail |
| C1H3g16806 | 3:14,082,216-14,087,526 | + | C2H3g06527 | CX3g028456 | LOC_Os03g27370 | Os03g0391400 | OsPLDα6, OsPLDalpha6 | Detail |
| C1H3g30949 | 3:14,098,577-14,102,189 | - | C2H3g10546 | CX3g028215 | LOC_Os03g27390 | Os03g0391700 | OsbHLH138 | Detail |
| C1H3g13034 | 3:14,137,069-14,139,047 | - | C2H3g23808 | CX3g030816 | LOC_Os03g27420 | Os03g0392000 | - | Detail |
| C1H3g16459 | 3:14,148,886-14,153,285 | + | C2H3g21955 | CX3g030757 | LOC_Os03g27450 | Os03g0392300 | - | Detail |
| C1H3g12299 | 3:14,166,777-14,170,489 | - | C2H3g23340 | CX3g027984 | LOC_Os03g27550 | Os03g0392600 | - | Detail |
| C1H3g05327 | 3:14,185,140-14,191,180 | - | C2H3g09365 | CX3g027782 | LOC_Os03g27510 | Os03g0392600 | - | Detail |
| C1H3g25121 | 3:14,196,569-14,197,153 | - | C2H3g09365 | CX3g027782 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C1H3g28596 | 3:14,218,106-14,229,932 | - | C2H3g00521 | CX3g026827 | LOC_Os03g27550 | Os03g0393300 | - | Detail |
| C1H3g26998 | 3:14,281,770-14,286,583 | - | C2H3g03469 | CX3g027706 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C1H3g17152 | 3:14,293,998-14,295,569 | + | C2H3g01147 | CX3g026110 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| C1H3g03234 | 3:14,355,598-14,359,883 | - | C2H3g26978 | CX3g027952 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| C1H3g11733 | 3:14,372,943-14,376,413 | - | C2H3g09617 | CX3g030447 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| C1H3g19183 | 3:14,381,513-14,384,690 | + | C2H3g01443 | CX3g028476 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| C1H3g08236 | 3:14,388,407-14,392,805 | - | C2H3g18166 | CX3g030371 | LOC_Os03g27800 | Os03g0395300 | - | Detail |
| C1H3g01799 | 3:14,403,137-14,410,258 | + | C2H3g07826 | CX3g026141 | LOC_Os03g27820 | Os03g0395600 | - | Detail |
| C1H3g24858 | 3:14,413,176-14,413,547 | - | C2H3g28386 | - | - | - | - | Detail |
| C1H3g28884 | 3:14,430,492-14,436,797 | + | C2H3g08215 | CX3g026363 | LOC_Os03g27840 | Os03g0395900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g02492 | 1:18,443,326-18,443,730 | - | C1H1g31287 | CX1g005411 | LOC_Os01g36580 | Os01g0546400 | - | Detail |
| C2H1g11812 | 1:18,452,385-18,454,172 | + | C1H1g12269 | CX1g003967 | LOC_Os01g36610 | Os01g0546700 | - | Detail |
| C2H1g29663 | 1:18,455,670-18,456,770 | - | C1H1g29970 | CX1g005136 | LOC_Os01g36620 | Os01g0546800 | OsPSE1, OsPLL1 | Detail |
| C2H1g12931 | 1:18,459,642-18,463,571 | + | C1H1g13286 | - | LOC_Os01g36630 | Os01g0546900 | - | Detail |
| C2H1g13519 | 1:18,473,413-18,473,866 | - | - | - | - | - | - | Detail |
| C2H1g05366 | 1:18,474,160-18,474,685 | - | - | - | - | - | - | Detail |
| C2H1g06891 | 1:18,480,514-18,482,756 | + | C1H1g13286 | - | LOC_Os01g36630 | Os01g0546900 | - | Detail |
| C2H1g03502 | 1:18,488,307-18,491,672 | + | C1H1g13286 | - | LOC_Os01g36630 | Os01g0546900 | - | Detail |
| C2H1g12072 | 1:18,495,709-18,499,127 | - | C1H1g20403 | CX1g000363 | LOC_Os01g36660 | Os01g0170500 | - | Detail |
| C2H1g04719 | 1:18,510,869-18,524,963 | - | C1H1g00906 | CX1g002050 | LOC_Os01g36670 | Os01g0547200 | ZBED | Detail |
| C2H1g21123 | 1:18,529,718-18,530,116 | - | C1H1g22917 | - | - | Os01g0547500 | - | Detail |
| C2H1g28243 | 1:18,534,830-18,537,201 | - | C1H1g09182 | CX1g002790 | LOC_Os01g36720 | Os01g0547600 | NRT2.4, OsNRT2.4 | Detail |
| C2H1g04817 | 1:18,585,411-18,589,815 | - | C1H1g04544 | CX1g002199 | LOC_Os01g36790 | Os01g0548600 | - | Detail |
| C2H1g15536 | 1:18,596,588-18,598,021 | - | C1H1g05325 | CX1g001738 | LOC_Os01g36820 | Os01g0548900 | - | Detail |
| C2H1g02901 | 1:18,607,041-18,609,488 | + | C1H1g02071 | CX1g001921 | LOC_Os01g36830 | Os01g0549000 | - | Detail |
| C2H1g03993 | 1:18,609,927-18,622,448 | - | C1H1g25951 | CX1g007010 | LOC_Os01g36840 | Os01g0549200 | - | Detail |
| C2H1g23463 | 1:18,644,526-18,655,700 | - | - | - | - | Os01g0273900 | - | Detail |
| C2H1g22202 | 1:18,656,524-18,662,381 | + | C1H1g24716 | CX1g004490 | LOC_Os01g36860 | Os01g0549400 | - | Detail |
| C2H1g01377 | 1:18,667,016-18,671,741 | - | C1H1g16520 | CX1g006486 | LOC_Os01g36870 | Os01g0549500 | - | Detail |
| C2H1g04678 | 1:18,673,093-18,678,273 | + | C1H1g20457 | CX1g001884 | LOC_Os01g36890 | Os01g0549700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |