| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30084 | 3:14,062,875-14,066,186 | + | C2H3g25165 | CX3g025932 | LOC_Os03g27320 | Os03g0390700 | OsTTL | Detail |
| C1H3g29350 | 3:14,068,181-14,072,011 | + | C2H3g02856 | CX3g027950 | LOC_Os03g27350 | Os03g0391000 | - | Detail |
| C1H3g09929 | 3:14,075,643-14,076,866 | + | C2H3g17457 | CX3g026532 | LOC_Os03g27360 | Os03g0391100 | - | Detail |
| C1H3g16806 | 3:14,082,216-14,087,526 | + | C2H3g06527 | CX3g028456 | LOC_Os03g27370 | Os03g0391400 | OsPLDα6, OsPLDalpha6 | Detail |
| C1H3g30949 | 3:14,098,577-14,102,189 | - | C2H3g10546 | CX3g028215 | LOC_Os03g27390 | Os03g0391700 | OsbHLH138 | Detail |
| C1H3g13034 | 3:14,137,069-14,139,047 | - | C2H3g23808 | CX3g030816 | LOC_Os03g27420 | Os03g0392000 | - | Detail |
| C1H3g16459 | 3:14,148,886-14,153,285 | + | C2H3g21955 | CX3g030757 | LOC_Os03g27450 | Os03g0392300 | - | Detail |
| C1H3g12299 | 3:14,166,777-14,170,489 | - | C2H3g23340 | CX3g027984 | LOC_Os03g27550 | Os03g0392600 | - | Detail |
| C1H3g05327 | 3:14,185,140-14,191,180 | - | C2H3g09365 | CX3g027782 | LOC_Os03g27510 | Os03g0392600 | - | Detail |
| C1H3g25121 | 3:14,196,569-14,197,153 | - | C2H3g09365 | CX3g027782 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C1H3g28596 | 3:14,218,106-14,229,932 | - | C2H3g00521 | CX3g026827 | LOC_Os03g27550 | Os03g0393300 | - | Detail |
| C1H3g26998 | 3:14,281,770-14,286,583 | - | C2H3g03469 | CX3g027706 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C1H3g17152 | 3:14,293,998-14,295,569 | + | C2H3g01147 | CX3g026110 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| C1H3g03234 | 3:14,355,598-14,359,883 | - | C2H3g26978 | CX3g027952 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| C1H3g11733 | 3:14,372,943-14,376,413 | - | C2H3g09617 | CX3g030447 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| C1H3g19183 | 3:14,381,513-14,384,690 | + | C2H3g01443 | CX3g028476 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| C1H3g08236 | 3:14,388,407-14,392,805 | - | C2H3g18166 | CX3g030371 | LOC_Os03g27800 | Os03g0395300 | - | Detail |
| C1H3g01799 | 3:14,403,137-14,410,258 | + | C2H3g07826 | CX3g026141 | LOC_Os03g27820 | Os03g0395600 | - | Detail |
| C1H3g24858 | 3:14,413,176-14,413,547 | - | C2H3g28386 | - | - | - | - | Detail |
| C1H3g28884 | 3:14,430,492-14,436,797 | + | C2H3g08215 | CX3g026363 | LOC_Os03g27840 | Os03g0395900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g20312 | 6:3,011,466-3,014,741 | - | C1H6g07391 | CX6g043507 | LOC_Os06g07820 | Os06g0175400 | - | Detail |
| C2H6g10106 | 6:3,016,530-3,023,332 | - | C1H6g02784 | CX6g043719 | LOC_Os06g07830 | Os06g0175500 | - | Detail |
| C2H6g25042 | 6:3,034,095-3,038,400 | + | C1H6g16155 | CX6g044311 | LOC_Os06g07960 | Os06g0176900 | - | Detail |
| C2H6g06323 | 6:3,039,273-3,039,660 | + | C1H6g14348 | - | LOC_Os06g07969 | Os06g0177000 | - | Detail |
| C2H6g03054 | 6:3,041,880-3,042,632 | + | C1H6g31129 | CX6g042580 | LOC_Os06g07878 | Os06g0177100 | - | Detail |
| C2H6g08361 | 6:3,044,043-3,045,428 | - | C1H6g26520 | CX6g045274 | LOC_Os06g07887 | Os06g0176100 | - | Detail |
| C2H6g13031 | 6:3,045,521-3,046,010 | - | C1H6g26520 | CX6g045274 | LOC_Os06g07887 | Os06g0176100 | - | Detail |
| C2H6g21353 | 6:3,046,925-3,049,670 | - | C1H6g01287 | CX6g044309 | LOC_Os06g07896 | Os06g0176150 | - | Detail |
| C2H6g01647 | 6:3,051,806-3,055,762 | + | C1H6g08355 | CX6g045669 | LOC_Os06g08005 | Os06g0177300 | - | Detail |
| C2H6g05281 | 6:3,063,289-3,065,394 | + | C1H6g07207 | CX6g041188 | LOC_Os06g08014 | Os06g0176300 | OsHSL5 | Detail |
| C2H6g01860 | 6:3,067,931-3,069,502 | + | C1H6g14502 | CX6g041188 | LOC_Os06g07923 | Os06g0176500 | OsHSL4 | Detail |
| C2H6g01849 | 6:3,070,816-3,072,305 | + | C1H6g27233 | CX6g041188 | LOC_Os06g07932 | Os06g0178500 | OsHSL1 | Detail |
| C2H6g22529 | 6:3,075,037-3,082,107 | + | C1H6g21884 | CX6g044099 | LOC_Os06g07941 | Os06g0176850 | OsHSL6 | Detail |
| C2H6g14573 | 6:3,083,824-3,084,081 | + | C1H6g23854 | CX6g044099 | LOC_Os06g08041 | Os06g0178650 | OsHSL6 | Detail |
| C2H6g17408 | 6:3,085,411-3,087,590 | + | C1H6g04527 | CX6g044099 | LOC_Os06g08060 | Os06g0178700 | OsHSL2 | Detail |
| C2H6g00583 | 6:3,097,710-3,103,055 | + | C1H6g23755 | CX6g041217 | LOC_Os06g08080 | Os06g0178900 | OVP2 | Detail |
| C2H6g14779 | 6:3,102,677-3,106,034 | - | C1H6g05855 | CX6g042908 | LOC_Os06g08090 | Os06g0179000 | - | Detail |
| C2H6g04536 | 6:3,110,093-3,110,806 | + | C1H6g00581 | CX6g041639 | LOC_Os06g08100 | Os06g0179100 | - | Detail |
| C2H6g08158 | 6:3,112,059-3,115,163 | - | C1H6g14903 | CX6g042522 | LOC_Os06g08110 | Os06g0179200 | - | Detail |
| C2H6g28867 | 6:3,119,286-3,121,025 | + | C1H6g16022 | CX6g045118 | LOC_Os06g08120 | Os06g0179500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |