| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16688 | 3:13,859,585-13,860,173 | + | - | - | - | - | - | Detail |
| C1H3g00426 | 3:13,862,049-13,864,352 | + | C2H3g15032 | CX3g025602 | LOC_Os03g27010 | Os03g0387800 | - | Detail |
| C1H3g07066 | 3:13,868,394-13,874,404 | + | C2H3g04924 | CX3g030395 | LOC_Os03g27019 | Os03g0387900 | - | Detail |
| C1H3g24480 | 3:13,876,485-13,878,787 | - | C2H3g03183 | CX3g026341 | LOC_Os03g27030 | Os03g0388000 | - | Detail |
| C1H3g21976 | 3:13,880,296-13,882,204 | - | C2H3g20630 | CX3g027742 | LOC_Os03g27040 | Os03g0388100 | - | Detail |
| C1H3g00293 | 3:13,898,142-13,910,383 | + | C2H3g29219 | CX3g030335 | LOC_Os03g27080 | Os03g0388500 | - | Detail |
| C1H3g09239 | 3:13,916,455-13,917,801 | - | C2H3g29965 | CX3g028996 | LOC_Os03g27090 | Os03g0388600 | Os2R_MYB38 | Detail |
| C1H3g24884 | 3:13,930,422-13,931,774 | + | C2H3g12804 | CX3g027644 | LOC_Os03g27110 | Os03g0388800 | OsSG34 | Detail |
| C1H3g20016 | 3:13,932,642-13,934,529 | - | C2H3g15221 | CX3g026189 | LOC_Os03g27120 | Os03g0388900 | OsMC1 | Detail |
| C1H3g10570 | 3:13,953,330-13,954,743 | - | C2H3g04943 | CX3g025998 | LOC_Os03g27170 | Os03g0389000 | OsMC3 | Detail |
| C1H3g25808 | 3:13,958,378-13,962,663 | - | C2H3g08633 | CX3g029196 | LOC_Os03g27190 | Os03g0389100 | OsMC8 | Detail |
| C1H3g15024 | 3:13,983,663-13,983,935 | - | C2H3g29112 | - | - | Os03g0389175 | - | Detail |
| C1H3g15059 | 3:13,985,665-13,985,925 | - | C2H3g00005 | CX3g030618 | LOC_Os03g27210 | Os03g0389400 | OsMC2 | Detail |
| C1H3g23745 | 3:13,986,419-13,987,388 | - | C2H3g14323 | CX3g030618 | LOC_Os03g27210 | Os03g0389400 | OsMC2 | Detail |
| C1H3g20114 | 3:14,008,256-14,012,688 | + | C2H3g24243 | CX3g025732 | LOC_Os03g27230 | Os03g0389700 | OsDAHPS1, DAHPS1 | Detail |
| C1H3g30971 | 3:14,017,647-14,025,052 | + | C2H3g12972 | CX3g028319 | LOC_Os03g27250 | Os03g0389900 | - | Detail |
| C1H3g19742 | 3:14,026,045-14,028,327 | - | C2H3g06738 | CX3g027960 | LOC_Os03g27260 | Os03g0390000 | - | Detail |
| C1H3g17252 | 3:14,032,066-14,036,406 | - | C2H3g21967 | CX3g031288 | LOC_Os03g27280 | Os03g0390200 | - | Detail |
| C1H3g08377 | 3:14,053,732-14,057,146 | + | C2H3g10154 | CX3g029813 | LOC_Os03g27290 | Os03g0390400 | - | Detail |
| C1H3g03476 | 3:14,060,129-14,062,030 | + | C2H3g16150 | CX3g025879 | LOC_Os03g27310 | Os03g0390600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g20318 | 4:23,380,102-23,380,731 | + | - | CX4g032986 | LOC_Os04g45834 | Os04g0542000 | OsS40-5 | Detail |
| C2H4g15404 | 4:23,387,657-23,390,558 | - | C1H4g01207 | CX4g036589 | LOC_Os04g45860 | Os04g0542200 | - | Detail |
| C2H4g15215 | 4:23,390,655-23,391,125 | - | C1H4g01207 | CX4g036589 | LOC_Os04g45860 | Os04g0542200 | - | Detail |
| C2H4g05921 | 4:23,402,042-23,405,453 | - | C1H4g26797 | CX4g034574 | LOC_Os04g45900 | Os04g0542800 | YSL16, OsYSL16, Os-YSL16, OsYs14 | Detail |
| C2H4g03772 | 4:23,410,292-23,413,618 | + | C1H4g00917 | CX4g031872 | LOC_Os04g45910 | Os04g0542900 | - | Detail |
| C2H4g18044 | 4:23,413,925-23,415,547 | - | C1H4g12022 | CX4g033127 | LOC_Os04g45920 | Os04g0543000 | OsRLCK155 | Detail |
| C2H4g06135 | 4:23,429,014-23,433,474 | + | C1H4g12009 | CX4g031771 | LOC_Os04g45930 | Os04g0543200 | - | Detail |
| C2H4g28036 | 4:23,439,432-23,440,064 | + | C1H4g29842 | CX4g033722 | LOC_Os04g45940 | Os04g0543500 | - | Detail |
| C2H4g07566 | 4:23,442,911-23,446,114 | - | C1H4g23068 | CX4g033912 | LOC_Os04g45950 | Os04g0543600 | - | Detail |
| C2H4g03875 | 4:23,446,261-23,446,641 | - | C1H4g23068 | CX4g033912 | - | Os02g0655700 | - | Detail |
| C2H4g23324 | 4:23,449,934-23,454,406 | + | C1H4g25515 | CX4g032899 | LOC_Os04g45960 | Os04g0543700 | OsMSP | Detail |
| C2H4g27717 | 4:23,460,578-23,465,286 | + | C1H4g25512 | CX4g035856 | LOC_Os04g45970 | Os04g0543900 | - | Detail |
| C2H4g03252 | 4:23,470,363-23,470,812 | + | - | CX4g032582 | LOC_Os04g45980 | Os04g0544000 | - | Detail |
| C2H4g24460 | 4:23,473,283-23,475,811 | - | C1H4g13260 | CX4g031976 | LOC_Os04g45990 | Os04g0544100 | SDG703 | Detail |
| C2H4g09721 | 4:23,481,284-23,483,216 | - | C1H4g05097 | CX4g031985 | LOC_Os04g46000 | Os04g0544200 | OsCYCP4;4 | Detail |
| C2H4g14132 | 4:23,485,628-23,487,989 | - | C1H4g03288 | CX4g036665 | LOC_Os04g46010 | Os04g0544400 | - | Detail |
| C2H4g05003 | 4:23,489,787-23,493,126 | - | C1H4g26782 | CX4g032526 | LOC_Os04g46020 | Os04g0544500 | - | Detail |
| C2H4g02497 | 4:23,503,765-23,510,671 | - | C1H4g29118 | CX4g034792 | LOC_Os04g46050 | Os04g0544900 | - | Detail |
| C2H4g17284 | 4:23,511,983-23,513,401 | - | C1H4g17617 | CX4g035537 | LOC_Os04g46060 | Os04g0545000 | OsWRKY36, SGSD3 | Detail |
| C2H4g22662 | 4:23,516,885-23,517,627 | - | C1H4g13000 | CX4g035537 | LOC_Os04g46060 | Os04g0545000 | OsWRKY36, SGSD3 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |