| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g10609 | 3:13,084,893-13,085,765 | - | C2H3g00617 | CX3g030534 | LOC_Os03g25550 | Os03g0371800 | - | Detail |
| C1H3g16595 | 3:13,085,830-13,086,327 | - | C2H3g00617 | CX3g030534 | LOC_Os03g25550 | Os03g0371800 | - | Detail |
| C1H3g09237 | 3:13,125,177-13,133,800 | + | C2H3g13066 | CX3g030141 | LOC_Os03g25600 | Os03g0821300 | - | Detail |
| C1H3g20988 | 3:13,136,297-13,136,900 | - | C2H3g24461 | CX3g030815 | LOC_Os03g25610 | Os03g0372600 | - | Detail |
| C1H3g26671 | 3:13,139,232-13,142,571 | + | C2H3g09558 | CX3g025086 | LOC_Os03g25620 | Os03g0372700 | - | Detail |
| C1H3g02459 | 3:13,166,542-13,170,433 | - | C2H3g30423 | CX3g029031 | LOC_Os03g25720 | Os03g0374100 | - | Detail |
| C1H3g03430 | 3:13,174,979-13,178,588 | + | C2H3g09363 | CX3g025872 | LOC_Os03g25750 | Os03g0374400 | - | Detail |
| C1H3g29992 | 3:13,180,001-13,182,532 | - | C2H3g02420 | CX3g031135 | LOC_Os03g25760 | Os03g0374500 | OsIQM3 | Detail |
| C1H3g04281 | 3:13,193,090-13,195,387 | - | C2H3g06785 | CX3g028239 | LOC_Os03g25770 | Os03g0374575 | OsSCL26 | Detail |
| C1H3g12991 | 3:13,200,156-13,205,327 | + | C2H3g13807 | CX3g025908 | LOC_Os03g25790 | Os03g0374600 | - | Detail |
| C1H3g11329 | 3:13,211,637-13,212,344 | - | C2H3g07823 | CX3g031122 | LOC_Os03g25820 | Os03g0375900 | - | Detail |
| C1H3g18047 | 3:13,225,800-13,226,291 | - | C2H3g13273 | CX3g031122 | LOC_Os03g25820 | Os03g0375900 | - | Detail |
| C1H3g22864 | 3:13,232,497-13,233,498 | - | C2H3g09283 | CX3g031122 | LOC_Os03g25869 | Os03g0375300 | - | Detail |
| C1H3g05274 | 3:13,243,391-13,246,165 | - | C2H3g17665 | CX3g025557 | LOC_Os03g25920 | Os03g0375966 | - | Detail |
| C1H3g13157 | 3:13,251,260-13,254,412 | - | C2H3g22221 | CX3g028356 | LOC_Os03g25930 | Os03g0376000 | - | Detail |
| C1H3g30616 | 3:13,257,477-13,261,052 | - | C2H3g00210 | CX3g030420 | LOC_Os03g25940 | Os03g0376100 | - | Detail |
| C1H3g18959 | 3:13,268,397-13,270,478 | - | C2H3g30664 | CX3g029886 | LOC_Os03g25960 | Os03g0376600 | OsRRM2 | Detail |
| C1H3g09004 | 3:13,278,445-13,282,986 | - | C2H3g23850 | CX3g027038 | LOC_Os03g25970 | Os03g0376800 | - | Detail |
| C1H3g26655 | 3:13,284,368-13,289,138 | + | C2H3g09355 | CX3g029788 | LOC_Os03g25980 | Os03g0376900 | - | Detail |
| C1H3g07493 | 3:13,299,871-13,300,470 | + | C2H3g25053 | CX3g029933 | LOC_Os03g25990 | Os03g0377100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g12160 | 2:31,977,251-31,978,025 | + | C1H2g03615 | CX2g022485 | LOC_Os02g57350 | Os02g0818900 | - | Detail |
| C2H2g13224 | 2:31,979,150-31,981,186 | + | C1H2g23220 | CX2g022485 | LOC_Os02g57360 | Os02g0819000 | - | Detail |
| C2H2g09349 | 2:32,001,094-32,003,759 | + | C1H2g05057 | CX2g023697 | LOC_Os02g57370 | Os02g0819100 | OsDHHC1 | Detail |
| C2H2g28063 | 2:32,005,507-32,006,402 | + | C1H2g03792 | CX2g018856 | LOC_Os02g53400 | Os02g0819200 | - | Detail |
| C2H2g11888 | 2:32,008,052-32,013,793 | + | C1H2g16081 | CX2g023843 | LOC_Os02g57390 | Os02g0819300 | - | Detail |
| C2H2g23556 | 2:32,014,351-32,019,166 | - | C1H2g29375 | CX2g024818 | LOC_Os02g57400 | Os02g0819400 | LPA1, OsLpa1.3, Oslpa1, Lpa1, OsLpa1 | Detail |
| C2H2g04446 | 2:32,023,238-32,028,227 | - | C1H2g01387 | CX2g019514 | LOC_Os02g57410 | Os02g0819500 | - | Detail |
| C2H2g12705 | 2:32,035,665-32,039,374 | - | C1H2g02066 | CX2g023750 | LOC_Os02g57420 | Os02g0819600 | - | Detail |
| C2H2g21639 | 2:32,044,698-32,045,991 | - | C1H2g26145 | CX2g022484 | LOC_Os02g57430 | Os02g0819700 | - | Detail |
| C2H2g10374 | 2:32,050,031-32,051,323 | + | C1H2g31294 | CX2g022770 | LOC_Os02g57440 | Os02g0819900 | - | Detail |
| C2H2g05211 | 2:32,052,563-32,056,340 | - | C1H2g00613 | CX2g019574 | LOC_Os02g57450 | Os02g0820000 | - | Detail |
| C2H2g09599 | 2:32,059,046-32,062,103 | + | C1H2g21703 | CX2g023170 | LOC_Os02g57460 | Os02g0820200 | - | Detail |
| C2H2g24658 | 2:32,063,046-32,065,515 | - | C1H2g19315 | CX2g020491 | LOC_Os02g57470 | Os02g0820300 | - | Detail |
| C2H2g13909 | 2:32,068,515-32,069,876 | - | C1H2g17511 | CX2g020751 | LOC_Os02g57480 | Os02g0820400 | - | Detail |
| C2H2g13334 | 2:32,073,929-32,074,692 | - | C1H2g27419 | CX2g023897 | LOC_Os02g57490 | Os02g0820500 | DH1, LBD16 | Detail |
| C2H2g23527 | 2:32,076,901-32,079,768 | - | C1H2g06878 | CX2g020258 | LOC_Os02g57500 | Os02g0820600 | - | Detail |
| C2H2g15378 | 2:32,080,502-32,086,118 | + | C1H2g20124 | CX2g019670 | LOC_Os02g57510 | Os02g0820700 | - | Detail |
| C2H2g25697 | 2:32,088,528-32,089,328 | + | C1H2g18462 | CX2g021426 | LOC_Os02g57520 | Os02g0820800 | PTC2 | Detail |
| C2H2g05580 | 2:32,096,925-32,101,365 | + | C1H2g08194 | CX2g022783 | LOC_Os02g57530 | Os02g0820900 | ETR3, ETR3, OsETR3, OS-ETR3, OsETR3a, OsETR3b, OsPK2, PK2, OsERS4 | Detail |
| C2H2g16075 | 2:32,102,265-32,104,185 | - | C1H2g23403 | CX2g023579 | LOC_Os02g57540 | Os02g0821200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |