| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16020 | 3:12,889,047-12,892,172 | + | C2H3g27128 | CX3g026804 | LOC_Os03g25260 | Os03g0367800 | - | Detail |
| C1H3g25920 | 3:12,897,662-12,899,471 | + | C2H3g07803 | CX3g026151 | LOC_Os03g25270 | Os03g0367900 | - | Detail |
| C1H3g11101 | 3:12,900,845-12,901,921 | - | C2H3g22531 | CX3g025169 | LOC_Os03g25300 | Os03g0368300 | - | Detail |
| C1H3g26587 | 3:12,909,133-12,910,214 | + | C2H3g22531 | CX3g025169 | LOC_Os03g25280 | Os03g0368000 | - | Detail |
| C1H3g14058 | 3:12,912,125-12,913,108 | + | - | - | - | - | - | Detail |
| C1H3g13259 | 3:12,918,278-12,920,038 | + | C2H3g27289 | CX3g025674 | LOC_Os03g25320 | Os03g0368300 | - | Detail |
| C1H3g07302 | 3:12,921,664-12,922,431 | - | C2H3g05845 | CX3g029980 | - | Os03g0699700 | Osr9-LOX1 | Detail |
| C1H3g15720 | 3:12,922,537-12,922,788 | - | C2H3g17436 | CX3g029980 | LOC_Os03g49260 | Os03g0699700 | Osr9-LOX1 | Detail |
| C1H3g14704 | 3:12,923,187-12,926,165 | - | C2H3g17436 | CX3g029980 | - | Os03g0699700 | Osr9-LOX1 | Detail |
| C1H3g26852 | 3:12,942,328-12,943,419 | + | C2H3g12026 | CX3g027878 | LOC_Os03g25330 | Os03g0368900 | - | Detail |
| C1H3g17834 | 3:12,950,367-12,951,909 | + | C2H3g16356 | CX3g025535 | LOC_Os03g25340 | Os03g0369000 | - | Detail |
| C1H3g18190 | 3:12,961,681-12,962,131 | + | C2H3g01197 | - | LOC_Os03g25350 | Os03g0369100 | OsLTPL36, OsCIP1 | Detail |
| C1H3g18951 | 3:12,964,473-12,965,878 | + | C2H3g22819 | CX3g024959 | LOC_Os03g25360 | Os03g0369000 | - | Detail |
| C1H3g00052 | 3:12,992,343-12,993,470 | + | C2H3g12152 | CX3g027308 | LOC_Os03g25370 | Os03g0369000 | - | Detail |
| C1H3g26552 | 3:13,002,460-13,006,145 | - | C2H3g02553 | CX3g027718 | LOC_Os03g25390 | Os03g0369800 | OsNPSN12 | Detail |
| C1H3g05126 | 3:13,017,140-13,020,859 | + | C2H3g10191 | CX3g029883 | LOC_Os03g25400 | Os03g0370000 | - | Detail |
| C1H3g23354 | 3:13,044,174-13,047,328 | + | C2H3g00547 | CX3g031102 | LOC_Os03g25480 | Os03g0370900 | - | Detail |
| C1H3g05051 | 3:13,050,507-13,053,153 | + | C2H3g19651 | CX3g027113 | LOC_Os03g25500 | Os03g0371000 | - | Detail |
| C1H3g00840 | 3:13,059,747-13,060,297 | + | C2H3g04381 | CX3g027113 | LOC_Os03g25500 | Os03g0371300 | - | Detail |
| C1H3g21806 | 3:13,063,203-13,065,886 | + | C2H3g15015 | CX3g031102 | LOC_Os03g25480 | Os03g0371350 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g11407 | 1:9,023,639-9,023,920 | - | - | - | LOC_Os01g17980 | - | - | Detail |
| C2H1g22929 | 1:9,028,394-9,032,997 | + | C1H1g00974 | CX1g006919 | LOC_Os01g17990 | - | - | Detail |
| C2H1g07113 | 1:9,058,742-9,062,526 | - | C1H1g19330 | CX1g000239 | LOC_Os01g18050 | Os01g0282800 | OsTUB1 | Detail |
| C2H1g14204 | 1:9,073,023-9,078,255 | - | C1H1g12917 | CX1g003294 | LOC_Os01g18060 | Os01g0283000 | - | Detail |
| C2H1g26601 | 1:9,078,275-9,082,841 | + | C1H1g28761 | CX1g007053 | LOC_Os01g18070 | Os01g0283100 | - | Detail |
| C2H1g01489 | 1:9,095,726-9,096,517 | + | - | - | LOC_Os01g18080 | Os01g0283300 | - | Detail |
| C2H1g29322 | 1:9,097,981-9,098,328 | + | - | CX1g005891 | LOC_Os01g18090 | Os01g0283400 | - | Detail |
| C2H1g04439 | 1:9,099,489-9,101,501 | - | C1H1g04332 | CX1g005282 | LOC_Os01g18100 | Os01g0283500 | - | Detail |
| C2H1g27306 | 1:9,111,838-9,113,757 | + | C1H1g15010 | CX1g001578 | LOC_Os01g18110 | Os01g0283600 | - | Detail |
| C2H1g06247 | 1:9,118,383-9,121,287 | - | C1H1g08875 | CX1g006385 | - | Os05g0435500 | - | Detail |
| C2H1g08442 | 1:9,121,349-9,121,684 | + | C1H1g09834 | - | - | - | - | Detail |
| C2H1g27708 | 1:9,123,503-9,126,848 | + | C1H1g15010 | CX1g005965 | LOC_Os01g18120 | Os01g0283700 | - | Detail |
| C2H1g22354 | 1:9,131,494-9,132,603 | + | C1H1g31050 | CX1g005156 | LOC_Os01g18150 | Os01g0284300 | - | Detail |
| C2H1g13905 | 1:9,134,569-9,135,338 | - | C1H1g09627 | CX1g002731 | LOC_Os01g18170 | Os01g0284500 | OsGER4 | Detail |
| C2H1g17254 | 1:9,142,721-9,145,663 | + | C1H1g10680 | CX1g000924 | LOC_Os01g18210 | Os01g0284700 | - | Detail |
| C2H1g07308 | 1:9,150,165-9,152,540 | - | C1H1g13588 | CX1g001111 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| C2H1g20440 | 1:9,158,775-9,159,592 | - | C1H1g17641 | CX1g003253 | LOC_Os01g18230 | Os01g0759700 | - | Detail |
| C2H1g10789 | 1:9,167,708-9,169,939 | - | C1H1g06479 | CX1g006251 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| C2H1g03219 | 1:9,209,366-9,212,756 | + | C1H1g05697 | CX1g000217 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| C2H1g23388 | 1:9,217,932-9,221,431 | - | C1H1g18723 | CX1g006989 | LOC_Os01g02110 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |