| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16020 | 3:12,889,047-12,892,172 | + | C2H3g27128 | CX3g026804 | LOC_Os03g25260 | Os03g0367800 | - | Detail |
| C1H3g25920 | 3:12,897,662-12,899,471 | + | C2H3g07803 | CX3g026151 | LOC_Os03g25270 | Os03g0367900 | - | Detail |
| C1H3g11101 | 3:12,900,845-12,901,921 | - | C2H3g22531 | CX3g025169 | LOC_Os03g25300 | Os03g0368300 | - | Detail |
| C1H3g26587 | 3:12,909,133-12,910,214 | + | C2H3g22531 | CX3g025169 | LOC_Os03g25280 | Os03g0368000 | - | Detail |
| C1H3g14058 | 3:12,912,125-12,913,108 | + | - | - | - | - | - | Detail |
| C1H3g13259 | 3:12,918,278-12,920,038 | + | C2H3g27289 | CX3g025674 | LOC_Os03g25320 | Os03g0368300 | - | Detail |
| C1H3g07302 | 3:12,921,664-12,922,431 | - | C2H3g05845 | CX3g029980 | - | Os03g0699700 | Osr9-LOX1 | Detail |
| C1H3g15720 | 3:12,922,537-12,922,788 | - | C2H3g17436 | CX3g029980 | LOC_Os03g49260 | Os03g0699700 | Osr9-LOX1 | Detail |
| C1H3g14704 | 3:12,923,187-12,926,165 | - | C2H3g17436 | CX3g029980 | - | Os03g0699700 | Osr9-LOX1 | Detail |
| C1H3g26852 | 3:12,942,328-12,943,419 | + | C2H3g12026 | CX3g027878 | LOC_Os03g25330 | Os03g0368900 | - | Detail |
| C1H3g17834 | 3:12,950,367-12,951,909 | + | C2H3g16356 | CX3g025535 | LOC_Os03g25340 | Os03g0369000 | - | Detail |
| C1H3g18190 | 3:12,961,681-12,962,131 | + | C2H3g01197 | - | LOC_Os03g25350 | Os03g0369100 | OsLTPL36, OsCIP1 | Detail |
| C1H3g18951 | 3:12,964,473-12,965,878 | + | C2H3g22819 | CX3g024959 | LOC_Os03g25360 | Os03g0369000 | - | Detail |
| C1H3g00052 | 3:12,992,343-12,993,470 | + | C2H3g12152 | CX3g027308 | LOC_Os03g25370 | Os03g0369000 | - | Detail |
| C1H3g26552 | 3:13,002,460-13,006,145 | - | C2H3g02553 | CX3g027718 | LOC_Os03g25390 | Os03g0369800 | OsNPSN12 | Detail |
| C1H3g05126 | 3:13,017,140-13,020,859 | + | C2H3g10191 | CX3g029883 | LOC_Os03g25400 | Os03g0370000 | - | Detail |
| C1H3g23354 | 3:13,044,174-13,047,328 | + | C2H3g00547 | CX3g031102 | LOC_Os03g25480 | Os03g0370900 | - | Detail |
| C1H3g05051 | 3:13,050,507-13,053,153 | + | C2H3g19651 | CX3g027113 | LOC_Os03g25500 | Os03g0371000 | - | Detail |
| C1H3g00840 | 3:13,059,747-13,060,297 | + | C2H3g04381 | CX3g027113 | LOC_Os03g25500 | Os03g0371300 | - | Detail |
| C1H3g21806 | 3:13,063,203-13,065,886 | + | C2H3g15015 | CX3g031102 | LOC_Os03g25480 | Os03g0371350 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H8g13211 | 8:21,447,034-21,448,143 | - | C1H8g31232 | CX8g054182 | LOC_Os08g39980 | Os08g0510700 | - | Detail |
| C2H8g07448 | 8:21,448,505-21,449,838 | - | C1H8g31232 | CX8g054182 | LOC_Os08g39980 | Os08g0510700 | - | Detail |
| C2H8g25749 | 8:21,452,577-21,453,716 | - | C1H9g12273 | CX8g050917 | LOC_Os08g39990 | Os08g0510800 | - | Detail |
| C2H8g04181 | 8:21,458,968-21,461,660 | + | C1H8g04920 | CX8g052027 | LOC_Os08g40010 | Os08g0510900 | - | Detail |
| C2H8g25618 | 8:21,462,672-21,464,210 | + | C1H8g29844 | CX8g051467 | LOC_Os08g40020 | Os08g0511000 | - | Detail |
| C2H8g09758 | 8:21,469,305-21,471,218 | - | C1H8g08233 | CX8g051129 | LOC_Os08g40030 | Os08g0511200 | OsCUC3 | Detail |
| C2H8g05688 | 8:21,481,365-21,481,889 | - | - | - | LOC_Os08g40060 | Os08g0511400 | - | Detail |
| C2H8g00208 | 8:21,485,693-21,486,067 | - | - | CX9g055236 | LOC_Os08g40080 | Os08g0511600 | - | Detail |
| C2H8g22517 | 8:21,489,438-21,491,523 | - | C1H8g05784 | CX8g054013 | LOC_Os08g40090 | Os08g0511700 | OsIRL4, pi55-1, pi55(t) | Detail |
| C2H8g28624 | 8:21,504,166-21,505,877 | - | C1H8g17789 | CX9g056061 | LOC_Os08g40100 | Os08g0511800 | - | Detail |
| C2H8g22216 | 8:21,507,099-21,510,970 | - | C1H8g17303 | CX8g054792 | LOC_Os08g40110 | Os08g0511900 | - | Detail |
| C2H8g01912 | 8:21,519,134-21,522,061 | + | C1H8g13566 | CX8g051208 | LOC_Os08g40120 | Os08g0512100 | - | Detail |
| C2H8g13020 | 8:21,523,792-21,524,916 | + | C1H8g25106 | CX8g053994 | LOC_Os08g40130 | Os08g0512200 | - | Detail |
| C2H8g21906 | 8:21,525,670-21,529,138 | + | C1H8g00693 | CX8g053394 | LOC_Os08g40140 | Os08g0512300 | - | Detail |
| C2H8g05099 | 8:21,529,454-21,533,802 | - | C1H8g20441 | CX8g053561 | LOC_Os08g40150 | Os08g0512400 | OsAHL16 | Detail |
| C2H8g28028 | 8:21,540,038-21,542,494 | + | C1H8g06615 | CX8g050659 | LOC_Os08g40160 | Os08g0512500 | - | Detail |
| C2H8g01482 | 8:21,543,826-21,545,433 | + | C1H8g24588 | CX8g050792 | LOC_Os08g40170 | Os08g0512600 | CDKB2;1, Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Orysa;CDKB;2 | Detail |
| C2H8g01373 | 8:21,550,733-21,555,287 | + | C1H8g03467 | CX8g051014 | LOC_Os08g40180 | Os08g0512700 | - | Detail |
| C2H8g25544 | 8:21,558,129-21,559,746 | + | C1H8g18158 | - | LOC_Os08g40190 | Os08g0512900 | - | Detail |
| C2H8g24125 | 8:21,561,966-21,565,722 | + | C1H8g01845 | CX8g054165 | LOC_Os08g40200 | Os08g0513000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |