| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g22124 | 3:12,649,215-12,651,546 | + | C2H3g21145 | CX3g028253 | LOC_Os03g24830 | Os03g0363200 | - | Detail |
| C1H3g12375 | 3:12,654,849-12,657,179 | + | C2H3g24910 | CX3g025171 | LOC_Os03g24844 | Os03g0363400 | - | Detail |
| C1H3g31412 | 3:12,657,529-12,662,670 | - | C2H3g07234 | CX3g026007 | LOC_Os03g24860 | Os03g0363500 | - | Detail |
| C1H3g09669 | 3:12,664,053-12,668,810 | - | C2H3g23765 | CX3g026520 | LOC_Os03g24870 | Os03g0363600 | OsERD2 | Detail |
| C1H3g25341 | 3:12,670,727-12,674,124 | - | C2H3g07525 | CX3g026469 | LOC_Os03g24880 | Os03g0363700 | - | Detail |
| C1H3g24559 | 3:12,674,403-12,678,574 | + | C2H3g30503 | CX3g025654 | LOC_Os03g24890 | Os03g0363800 | OsSCL28 | Detail |
| C1H3g28751 | 3:12,681,854-12,686,286 | + | C2H3g27719 | CX3g026595 | LOC_Os03g24900 | Os03g0363900 | DHHC09, DHHC09-II | Detail |
| C1H3g13730 | 3:12,686,912-12,689,552 | - | C2H3g02370 | CX3g027300 | LOC_Os03g24910 | Os03g0363950 | - | Detail |
| C1H3g05488 | 3:12,695,273-12,697,900 | - | C2H3g17587 | CX3g025659 | LOC_Os03g24920 | Os03g0364000 | - | Detail |
| C1H3g09584 | 3:12,704,646-12,706,264 | + | C2H3g05857 | CX3g031356 | LOC_Os03g24930 | Os03g0364400 | - | Detail |
| C1H3g19834 | 3:12,709,340-12,716,838 | - | C2H3g14199 | CX3g025767 | LOC_Os03g24940 | Os03g0364500 | - | Detail |
| C1H3g08779 | 3:12,729,723-12,732,708 | + | C2H3g02255 | CX3g028963 | LOC_Os03g24950 | Os03g0364700 | - | Detail |
| C1H3g20332 | 3:12,743,924-12,744,199 | + | C2H3g14794 | CX3g025793 | LOC_Os03g24960 | Os03g0365000 | - | Detail |
| C1H3g24694 | 3:12,748,965-12,751,638 | + | C2H3g19293 | CX3g025793 | LOC_Os03g25000 | Os03g0365000 | - | Detail |
| C1H3g02602 | 3:12,773,281-12,776,651 | + | C2H3g14009 | CX3g030240 | LOC_Os03g25040 | Os03g0365900 | - | Detail |
| C1H3g23692 | 3:12,777,660-12,780,277 | - | C2H3g02613 | CX3g028892 | LOC_Os03g25050 | Os03g0366000 | - | Detail |
| C1H3g05133 | 3:12,801,026-12,808,326 | + | C2H3g02942 | CX3g026420 | LOC_Os03g25070 | Os03g0366200 | OsCBK | Detail |
| C1H3g00297 | 3:12,814,527-12,818,692 | + | C2H3g20719 | CX3g029824 | LOC_Os03g25110 | Os03g0366700 | - | Detail |
| C1H3g11212 | 3:12,836,158-12,846,588 | + | C2H3g05889 | CX3g030531 | LOC_Os03g25140 | Os03g0367000 | - | Detail |
| C1H3g27498 | 3:12,857,429-12,863,941 | + | C2H3g05330 | CX3g026873 | LOC_Os03g25150 | Os03g0367200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g10870 | 5:2,764,057-2,769,694 | - | C1H5g01429 | CX5g037873 | LOC_Os05g06350 | Os05g0155601 | Imp a1b, Imp3 | Detail |
| C2H5g10571 | 5:2,772,256-2,777,648 | + | C1H5g05444 | CX5g036886 | LOC_Os05g06360 | Os05g0155700 | - | Detail |
| C2H5g29906 | 5:2,783,261-2,784,652 | + | C1H5g08048 | CX5g040299 | LOC_Os05g06380 | Os05g0155800 | - | Detail |
| C2H5g30592 | 5:2,792,434-2,793,738 | + | C1H5g08048 | CX5g040434 | LOC_Os05g06380 | Os05g0155800 | - | Detail |
| C2H5g22135 | 5:2,799,478-2,802,268 | + | C1H5g20577 | CX5g040720 | LOC_Os05g06420 | Os05g0156200 | - | Detail |
| C2H5g24185 | 5:2,804,420-2,807,812 | - | C1H5g09510 | CX5g039738 | LOC_Os05g06430 | Os05g0156300 | - | Detail |
| C2H5g26310 | 5:2,815,955-2,820,288 | + | C1H5g09608 | CX5g036765 | LOC_Os05g06440 | Os05g0156500 | - | Detail |
| C2H5g19277 | 5:2,820,449-2,825,519 | - | C1H5g14046 | CX5g037146 | LOC_Os05g06450 | Os05g0156600 | - | Detail |
| C2H5g05970 | 5:2,827,521-2,834,014 | - | C1H5g24964 | CX5g038153 | LOC_Os05g06460 | Os05g0156700 | OsLPD1 | Detail |
| C2H5g20269 | 5:2,838,758-2,850,343 | + | C1H5g24978 | CX5g038021 | LOC_Os05g06470 | Os05g0156800 | - | Detail |
| C2H5g09414 | 5:2,851,034-2,855,117 | - | C1H5g24292 | CX5g037368 | LOC_Os05g06480 | Os05g0156900 | Chalk5 | Detail |
| C2H5g11758 | 5:2,860,791-2,863,087 | - | C1H5g00102 | CX5g037609 | LOC_Os05g06500 | Os05g0157200 | - | Detail |
| C2H5g06394 | 5:2,864,710-2,868,737 | - | C1H5g31378 | CX5g036870 | LOC_Os05g06510 | Os05g0157300 | - | Detail |
| C2H5g00238 | 5:2,873,275-2,874,014 | + | C1H5g16317 | CX5g039713 | LOC_Os05g06650 | Os05g0158400 | - | Detail |
| C2H5g01907 | 5:2,874,310-2,876,762 | + | C1H5g16317 | CX5g039713 | LOC_Os05g06630 | Os05g0158200 | - | Detail |
| C2H5g29731 | 5:2,882,126-2,886,279 | + | C1H5g16317 | CX5g040970 | LOC_Os05g06540 | Os05g0157600 | - | Detail |
| C2H5g15119 | 5:2,938,106-2,941,501 | + | C1H5g16317 | CX5g038380 | LOC_Os05g06630 | Os05g0158200 | - | Detail |
| C2H5g22849 | 5:2,947,907-2,951,658 | + | C1H5g05673 | CX5g039850 | LOC_Os05g06650 | Os05g0158400 | - | Detail |
| C2H5g05727 | 5:2,952,931-2,957,012 | - | C1H5g28371 | CX5g037102 | LOC_Os05g06660 | Os05g0158500 | GS5, OsSCP26 | Detail |
| C2H5g19140 | 5:2,973,259-2,979,155 | + | C1H5g06427 | CX5g037159 | LOC_Os05g06670 | Os05g0158600 | GA2OX1, OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |