| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24369 | 3:12,365,371-12,373,037 | - | C2H3g19566 | CX3g028360 | LOC_Os03g24460 | Os03g0359100 | - | Detail |
| C1H3g29038 | 3:12,377,550-12,377,741 | + | C2H3g07837 | - | - | - | - | Detail |
| C1H3g24260 | 3:12,383,588-12,384,238 | + | C2H3g30335 | CX3g028005 | LOC_Os03g24560 | Os03g0360300 | - | Detail |
| C1H3g06016 | 3:12,386,614-12,389,433 | + | C2H3g23651 | CX3g026622 | - | Os03g0202500 | - | Detail |
| C1H3g10908 | 3:12,396,508-12,400,297 | - | C2H3g11576 | CX3g025165 | LOC_Os03g24520 | Os03g0359700 | - | Detail |
| C1H3g04236 | 3:12,404,888-12,409,153 | - | C2H3g27563 | CX3g029301 | LOC_Os03g24580 | Os03g0360500 | - | Detail |
| C1H3g00317 | 3:12,416,055-12,419,546 | + | C2H3g30143 | CX3g028418 | LOC_Os03g24600 | Os03g0360700 | OsMSRB5 | Detail |
| C1H3g00810 | 3:12,421,170-12,424,797 | + | C2H3g18552 | CX3g030502 | LOC_Os03g24610 | Os03g0360800 | - | Detail |
| C1H3g25268 | 3:12,437,244-12,439,620 | + | C2H3g08848 | CX3g028479 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C1H3g10968 | 3:12,448,892-12,451,889 | + | C2H3g01009 | CX3g028091 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C1H3g06434 | 3:12,460,169-12,462,089 | - | C2H3g10773 | CX3g028227 | LOC_Os03g24650 | Os03g0361700 | - | Detail |
| C1H3g24193 | 3:12,486,048-12,491,848 | + | C2H3g13152 | CX3g028193 | LOC_Os03g24680 | Os03g0361600 | - | Detail |
| C1H3g23561 | 3:12,556,284-12,559,090 | - | C2H3g09511 | - | - | - | - | Detail |
| C1H3g19660 | 3:12,561,774-12,562,895 | - | C2H3g25785 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C1H3g14470 | 3:12,563,290-12,565,007 | - | C2H3g04211 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C1H3g07323 | 3:12,596,798-12,600,876 | + | C2H3g17100 | CX3g028193 | LOC_Os03g24760 | Os03g0362500 | - | Detail |
| C1H3g15261 | 3:12,603,728-12,604,306 | - | C2H3g08257 | CX3g028041 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C1H3g26242 | 3:12,605,921-12,606,196 | - | C2H3g08257 | CX3g028041 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C1H3g19204 | 3:12,630,350-12,633,647 | + | C2H3g24954 | CX3g029989 | LOC_Os03g24730 | Os03g0362200 | - | Detail |
| C1H3g31305 | 3:12,645,787-12,648,421 | + | C2H3g21455 | CX3g027415 | LOC_Os03g24820 | Os03g0363100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02008 | 3:26,182,013-26,183,143 | - | C1H3g04028 | CX3g026061 | LOC_Os03g50110 | Os03g0708800 | - | Detail |
| C2H3g01107 | 3:26,185,381-26,189,613 | + | C1H3g25650 | CX3g026724 | LOC_Os03g50120 | Os03g0708900 | - | Detail |
| C2H3g12581 | 3:26,191,414-26,193,120 | - | C1H3g26419 | CX3g026549 | - | Os03g0709000 | - | Detail |
| C2H3g23367 | 3:26,194,969-26,195,175 | - | C1H3g00554 | CX3g030849 | LOC_Os03g50140 | Os03g0709100 | OsUCL8 | Detail |
| C2H3g12217 | 3:26,195,267-26,195,473 | - | C1H3g08833 | CX3g030849 | LOC_Os03g50140 | Os03g0709100 | OsUCL8 | Detail |
| C2H3g17990 | 3:26,201,153-26,203,099 | - | C1H3g00862 | CX3g027687 | LOC_Os03g50160 | Os03g0709300 | - | Detail |
| C2H3g00532 | 3:26,209,333-26,211,854 | - | C1H12g23110 | - | - | - | - | Detail |
| C2H3g22762 | 3:26,225,661-26,226,970 | + | C1H3g26800 | CX3g031286 | LOC_Os03g50210 | Os03g0710000 | - | Detail |
| C2H3g19621 | 3:26,227,851-26,230,459 | - | C1H3g31046 | CX3g026541 | LOC_Os03g50220 | - | - | Detail |
| C2H3g18554 | 3:26,231,717-26,234,922 | - | C1H3g04126 | CX3g026477 | LOC_Os03g50230 | Os03g0710100 | OsHOP2 | Detail |
| C2H3g09223 | 3:26,235,915-26,237,007 | - | C1H3g07148 | CX3g026477 | LOC_Os03g50230 | Os03g0710100 | OsHOP2 | Detail |
| C2H3g20376 | 3:26,239,365-26,242,346 | + | C1H3g05875 | CX3g028078 | LOC_Os03g50250 | Os03g0710500 | - | Detail |
| C2H3g06541 | 3:26,246,057-26,247,590 | - | C1H3g17966 | CX3g029323 | LOC_Os03g50270 | Os03g0710600 | - | Detail |
| C2H3g00310 | 3:26,250,143-26,251,759 | - | C1H3g12018 | CX3g027946 | LOC_Os03g50280 | Os03g0710700 | - | Detail |
| C2H3g13816 | 3:26,259,380-26,263,162 | + | C1H3g30860 | CX3g029821 | LOC_Os03g50290 | Os03g0710800 | GF14f, SR14-3-3 | Detail |
| C2H3g13830 | 3:26,265,796-26,273,924 | + | C1H3g01378 | CX3g029660 | LOC_Os03g50300 | Os03g0710900 | - | Detail |
| C2H3g07676 | 3:26,279,870-26,282,288 | + | C1H3g31233 | CX3g028553 | LOC_Os03g50310 | Os03g0711100 | OsCOL10, OsBBX10, OsJ, OsCCT14 | Detail |
| C2H3g02097 | 3:26,282,644-26,297,961 | - | C1H3g26509 | CX3g031158 | LOC_Os03g50320 | Os03g0711200 | - | Detail |
| C2H3g27257 | 3:26,299,995-26,307,777 | - | C1H3g08523 | CX3g026863 | LOC_Os03g50330 | Os03g0711300 | - | Detail |
| C2H3g20089 | 3:26,309,999-26,315,252 | - | C1H3g29848 | CX3g028922 | LOC_Os03g50340 | Os03g0711400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |