| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g05770 | 3:12,121,330-12,124,833 | + | C2H3g06071 | CX3g031073 | LOC_Os03g23960 | Os03g0355700 | - | Detail |
| C1H3g06132 | 3:12,125,485-12,127,722 | - | C2H3g19901 | CX3g030920 | LOC_Os03g23970 | Os03g0355800 | - | Detail |
| C1H3g21571 | 3:12,129,195-12,132,058 | - | C2H3g13826 | CX3g031321 | LOC_Os03g23980 | Os03g0355900 | - | Detail |
| C1H3g12783 | 3:12,137,479-12,139,967 | - | C2H3g28171 | CX3g028805 | LOC_Os03g24020 | Os03g0356300 | - | Detail |
| C1H3g04093 | 3:12,143,997-12,147,716 | - | C2H3g03916 | CX3g029486 | LOC_Os03g24040 | Os03g0356414 | OsDIS1, RIP5 | Detail |
| C1H3g10870 | 3:12,158,192-12,161,185 | - | C2H3g11837 | CX3g028879 | LOC_Os03g24060 | Os03g0356484 | - | Detail |
| C1H3g31470 | 3:12,170,300-12,173,233 | + | C2H3g26682 | CX3g029746 | LOC_Os03g24070 | Os03g0356498 | - | Detail |
| C1H3g17743 | 3:12,199,252-12,203,723 | + | C2H3g08808 | CX3g025443 | LOC_Os03g24160 | Os03g0356582 | - | Detail |
| C1H3g08944 | 3:12,203,997-12,209,435 | + | C2H3g17773 | CX3g026195 | LOC_Os03g24170 | Os03g0356596 | - | Detail |
| C1H3g10425 | 3:12,211,416-12,223,031 | - | C2H3g23180 | CX3g030641 | LOC_Os03g24180 | Os03g0356638 | - | Detail |
| C1H3g18732 | 3:12,228,197-12,232,366 | - | C2H3g21028 | - | LOC_Os03g24184 | Os03g0356652 | - | Detail |
| C1H3g13461 | 3:12,238,493-12,247,765 | - | C2H3g17361 | CX3g027125 | - | - | - | Detail |
| C1H3g23838 | 3:12,260,339-12,272,066 | + | C2H3g17190 | CX3g026980 | LOC_Os03g24220 | Os03g0356700 | - | Detail |
| C1H3g26654 | 3:12,300,781-12,317,324 | - | C2H3g04618 | CX3g025978 | LOC_Os03g24339 | Os03g0358000 | - | Detail |
| C1H3g20604 | 3:12,323,583-12,326,716 | + | C2H3g25339 | CX3g027667 | LOC_Os03g24380 | Os03g0358100 | OsPHGPX | Detail |
| C1H3g15120 | 3:12,328,181-12,330,447 | - | C2H3g18105 | CX3g026378 | LOC_Os03g24390 | Os03g0358200 | - | Detail |
| C1H3g25429 | 3:12,330,989-12,331,724 | - | C2H3g18105 | CX3g026378 | LOC_Os03g24390 | Os03g0358200 | - | Detail |
| C1H3g03806 | 3:12,337,343-12,338,848 | + | C2H3g29820 | CX3g027747 | LOC_Os03g24430 | Os03g0358800 | - | Detail |
| C1H3g03929 | 3:12,340,514-12,340,877 | + | C2H3g02173 | - | - | - | - | Detail |
| C1H3g20488 | 3:12,347,514-12,355,111 | - | C2H3g26481 | CX3g029410 | LOC_Os03g24450 | Os03g0359000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05622 | 3:28,346,036-28,348,511 | - | C1H3g17674 | CX3g025807 | LOC_Os03g53970 | Os03g0750900 | - | Detail |
| C2H3g27227 | 3:28,354,593-28,355,389 | + | C1H3g30640 | CX3g029898 | LOC_Os03g53980 | Os03g0751000 | - | Detail |
| C2H3g03528 | 3:28,356,604-28,357,468 | - | C1H3g24232 | CX3g026633 | LOC_Os03g61780 | Os03g0221500 | - | Detail |
| C2H3g12979 | 3:28,359,296-28,363,917 | + | C1H3g23380 | CX3g029143 | LOC_Os03g53990 | Os03g0751050 | - | Detail |
| C2H3g03358 | 3:28,364,903-28,368,682 | - | C1H3g12600 | CX3g026203 | LOC_Os03g54000 | Os03g0751100 | - | Detail |
| C2H3g04810 | 3:28,374,612-28,380,038 | + | C1H3g23388 | CX3g028805 | LOC_Os03g54040 | Os03g0751400 | - | Detail |
| C2H3g04305 | 3:28,385,441-28,387,151 | + | C1H3g07489 | CX3g027092 | LOC_Os03g54050 | Os03g0751600 | - | Detail |
| C2H3g09716 | 3:28,394,981-28,400,355 | + | C1H3g19762 | CX3g030127 | LOC_Os03g54084 | Os03g0752100 | PHYC | Detail |
| C2H3g05209 | 3:28,400,892-28,404,773 | + | C1H3g25474 | CX3g031059 | LOC_Os03g54091 | Os03g0752200 | OsSPO11-1, OsTOP6A1 | Detail |
| C2H3g18265 | 3:28,406,229-28,407,037 | - | C1H3g21048 | CX3g026511 | LOC_Os03g54100 | Os03g0752300 | TPKA, TPKa, OsTPKa | Detail |
| C2H3g06363 | 3:28,414,853-28,416,272 | + | C1H3g03067 | CX3g025106 | LOC_Os03g54130 | Os03g0752500 | - | Detail |
| C2H3g21077 | 3:28,417,683-28,421,587 | + | C1H3g23694 | CX3g030009 | LOC_Os03g54150 | Os03g0752700 | - | Detail |
| C2H3g04730 | 3:28,422,062-28,426,447 | - | C1H3g26147 | CX3g031002 | LOC_Os03g54160 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| C2H3g23019 | 3:28,436,282-28,437,780 | - | C1H3g02420 | CX3g026708 | LOC_Os03g54160 | Os03g0752800 | MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10, RAP1B | Detail |
| C2H3g26552 | 3:28,445,807-28,451,302 | - | C1H3g27451 | CX3g031002 | LOC_Os03g54170 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| C2H3g26951 | 3:28,451,740-28,451,928 | - | C1H3g02242 | CX3g031002 | LOC_Os03g54170 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| C2H3g17415 | 3:28,468,540-28,470,560 | - | C1H3g31832 | CX3g030268 | LOC_Os03g54190 | Os03g0753500 | - | Detail |
| C2H3g04287 | 3:28,476,444-28,478,155 | + | C1H3g27471 | CX3g026043 | - | - | - | Detail |
| C2H3g04194 | 3:28,479,652-28,483,328 | - | C1H3g27092 | CX3g027702 | LOC_Os03g54750 | Os03g0754500 | - | Detail |
| C2H3g28760 | 3:28,487,638-28,491,043 | + | C1H3g31483 | CX3g030330 | LOC_Os03g54760 | Os03g0754800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |