| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g05770 | 3:12,121,330-12,124,833 | + | C2H3g06071 | CX3g031073 | LOC_Os03g23960 | Os03g0355700 | - | Detail |
| C1H3g06132 | 3:12,125,485-12,127,722 | - | C2H3g19901 | CX3g030920 | LOC_Os03g23970 | Os03g0355800 | - | Detail |
| C1H3g21571 | 3:12,129,195-12,132,058 | - | C2H3g13826 | CX3g031321 | LOC_Os03g23980 | Os03g0355900 | - | Detail |
| C1H3g12783 | 3:12,137,479-12,139,967 | - | C2H3g28171 | CX3g028805 | LOC_Os03g24020 | Os03g0356300 | - | Detail |
| C1H3g04093 | 3:12,143,997-12,147,716 | - | C2H3g03916 | CX3g029486 | LOC_Os03g24040 | Os03g0356414 | OsDIS1, RIP5 | Detail |
| C1H3g10870 | 3:12,158,192-12,161,185 | - | C2H3g11837 | CX3g028879 | LOC_Os03g24060 | Os03g0356484 | - | Detail |
| C1H3g31470 | 3:12,170,300-12,173,233 | + | C2H3g26682 | CX3g029746 | LOC_Os03g24070 | Os03g0356498 | - | Detail |
| C1H3g17743 | 3:12,199,252-12,203,723 | + | C2H3g08808 | CX3g025443 | LOC_Os03g24160 | Os03g0356582 | - | Detail |
| C1H3g08944 | 3:12,203,997-12,209,435 | + | C2H3g17773 | CX3g026195 | LOC_Os03g24170 | Os03g0356596 | - | Detail |
| C1H3g10425 | 3:12,211,416-12,223,031 | - | C2H3g23180 | CX3g030641 | LOC_Os03g24180 | Os03g0356638 | - | Detail |
| C1H3g18732 | 3:12,228,197-12,232,366 | - | C2H3g21028 | - | LOC_Os03g24184 | Os03g0356652 | - | Detail |
| C1H3g13461 | 3:12,238,493-12,247,765 | - | C2H3g17361 | CX3g027125 | - | - | - | Detail |
| C1H3g23838 | 3:12,260,339-12,272,066 | + | C2H3g17190 | CX3g026980 | LOC_Os03g24220 | Os03g0356700 | - | Detail |
| C1H3g26654 | 3:12,300,781-12,317,324 | - | C2H3g04618 | CX3g025978 | LOC_Os03g24339 | Os03g0358000 | - | Detail |
| C1H3g20604 | 3:12,323,583-12,326,716 | + | C2H3g25339 | CX3g027667 | LOC_Os03g24380 | Os03g0358100 | OsPHGPX | Detail |
| C1H3g15120 | 3:12,328,181-12,330,447 | - | C2H3g18105 | CX3g026378 | LOC_Os03g24390 | Os03g0358200 | - | Detail |
| C1H3g25429 | 3:12,330,989-12,331,724 | - | C2H3g18105 | CX3g026378 | LOC_Os03g24390 | Os03g0358200 | - | Detail |
| C1H3g03806 | 3:12,337,343-12,338,848 | + | C2H3g29820 | CX3g027747 | LOC_Os03g24430 | Os03g0358800 | - | Detail |
| C1H3g03929 | 3:12,340,514-12,340,877 | + | C2H3g02173 | - | - | - | - | Detail |
| C1H3g20488 | 3:12,347,514-12,355,111 | - | C2H3g26481 | CX3g029410 | LOC_Os03g24450 | Os03g0359000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g17831 | 1:36,696,932-36,698,905 | - | C1H1g14395 | CX1g005035 | LOC_Os01g71262 | Os01g0939400 | - | Detail |
| C2H1g21755 | 1:36,705,242-36,709,576 | + | C1H1g19591 | CX1g007004 | LOC_Os01g71280 | Os01g0939600 | - | Detail |
| C2H1g29286 | 1:36,710,705-36,724,570 | + | C1H1g21264 | - | LOC_Os01g71300 | Os01g0939700 | - | Detail |
| C2H1g28290 | 1:36,724,845-36,729,879 | + | C1H1g12592 | - | LOC_Os01g71300 | Os01g0939700 | - | Detail |
| C2H1g22141 | 1:36,757,996-36,760,764 | + | C1H1g26080 | CX1g000893 | LOC_Os01g71310 | Os01g0940000 | CKX4, OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2 | Detail |
| C2H1g01876 | 1:36,763,587-36,766,798 | - | C1H1g08967 | CX1g004002 | LOC_Os01g71320 | Os01g0940100 | - | Detail |
| C2H1g23541 | 1:36,769,292-36,769,639 | - | C1H1g08967 | CX1g004002 | LOC_Os01g71320 | Os01g0940100 | - | Detail |
| C2H1g06863 | 1:36,790,745-36,791,275 | + | C1H1g04585 | CX1g006883 | LOC_Os01g71330 | Os01g0940600 | - | Detail |
| C2H1g01858 | 1:36,794,410-36,796,131 | + | C1H1g16091 | CX1g000254 | LOC_Os01g71340 | Os01g0940700 | - | Detail |
| C2H1g03308 | 1:36,797,876-36,799,254 | + | C1H1g10602 | CX1g000254 | LOC_Os01g71350 | Os01g0940800 | Gns6 | Detail |
| C2H1g26876 | 1:36,803,685-36,804,841 | + | C1H1g16335 | CX1g000254 | LOC_Os01g71860 | Os01g0947000 | - | Detail |
| C2H1g01984 | 1:36,808,469-36,809,631 | + | C1H1g16091 | CX1g004707 | LOC_Os01g71400 | Os01g0944500 | - | Detail |
| C2H1g16744 | 1:36,812,907-36,814,022 | + | C1H1g17272 | CX1g004794 | LOC_Os01g71410 | Os01g0941500 | - | Detail |
| C2H1g10883 | 1:36,817,679-36,819,593 | - | C1H1g10405 | CX1g000710 | LOC_Os01g71420 | Os01g0941800 | - | Detail |
| C2H1g22406 | 1:36,826,438-36,827,760 | - | C1H1g13310 | CX1g006806 | LOC_Os01g71460 | Os01g0942200 | - | Detail |
| C2H1g09469 | 1:36,828,146-36,831,987 | - | C1H1g19466 | CX1g002838 | LOC_Os01g71474 | Os01g0942300 | OsEGL2 | Detail |
| C2H1g19657 | 1:36,839,238-36,841,002 | - | C1H1g16335 | CX1g004794 | LOC_Os01g71860 | Os01g0947000 | - | Detail |
| C2H1g18324 | 1:36,842,401-36,843,306 | - | C1H1g09892 | CX1g004621 | LOC_Os01g71680 | Os01g0944800 | - | Detail |
| C2H1g11627 | 1:36,845,182-36,846,153 | - | C1H1g23548 | CX1g003176 | LOC_Os01g71690 | Os01g0947000 | - | Detail |
| C2H1g30428 | 1:36,847,690-36,851,615 | - | C1H1g21476 | CX1g004650 | LOC_Os01g71690 | Os01g0945001 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |