| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17947 | 3:11,914,153-11,918,845 | - | C2H3g26186 | CX3g027882 | LOC_Os03g22800 | Os03g0351400 | - | Detail |
| C1H3g29229 | 3:11,939,134-11,940,660 | + | C2H3g20435 | CX3g027904 | LOC_Os03g22810 | Os03g0351500 | CSD1 | Detail |
| C1H3g18570 | 3:11,955,593-11,958,092 | - | C2H3g14393 | CX3g025092 | - | - | - | Detail |
| C1H3g11942 | 3:11,959,252-11,960,341 | - | - | CX3g025092 | - | - | - | Detail |
| C1H3g27962 | 3:11,977,336-11,981,389 | + | C2H3g15700 | CX3g027668 | LOC_Os03g22870 | Os03g0352200 | - | Detail |
| C1H3g04417 | 3:11,982,005-11,984,948 | - | C2H3g04437 | CX3g025721 | LOC_Os03g22880 | Os03g0352300 | - | Detail |
| C1H3g10842 | 3:11,986,758-11,991,437 | + | C2H3g25554 | CX3g030381 | LOC_Os03g22890 | Os03g0352400 | OsNug2 | Detail |
| C1H3g16038 | 3:11,996,283-12,007,528 | + | C2H3g13717 | CX3g025999 | LOC_Os03g22900 | Os03g0352500 | OsINO80 | Detail |
| C1H3g08430 | 3:12,023,897-12,025,933 | - | C2H3g17584 | CX3g025916 | LOC_Os03g22950 | Os03g0352800 | OsMTACP2, CTB18 | Detail |
| C1H3g07024 | 3:12,027,840-12,028,877 | + | C2H3g12615 | CX3g029374 | LOC_Os03g22960 | Os03g0353000 | - | Detail |
| C1H3g25359 | 3:12,031,104-12,031,292 | + | C2H3g04581 | - | LOC_Os03g22990 | - | - | Detail |
| C1H3g09018 | 3:12,031,354-12,035,641 | + | C2H3g04581 | CX3g029843 | LOC_Os03g22990 | Os03g0353300 | - | Detail |
| C1H3g12995 | 3:12,035,644-12,035,880 | - | C2H3g21766 | CX3g027651 | LOC_Os03g23000 | Os03g0353333 | - | Detail |
| C1H3g26840 | 3:12,040,577-12,041,744 | + | C2H3g01500 | CX3g026671 | LOC_Os03g23010 | Os03g0353400 | - | Detail |
| C1H3g22809 | 3:12,045,696-12,047,596 | + | C2H3g07846 | CX3g029165 | LOC_Os03g23020 | Os03g0353500 | - | Detail |
| C1H3g12732 | 3:12,048,747-12,064,117 | + | C2H3g26280 | CX3g029602 | LOC_Os03g23030 | Os03g0353600 | OsAPT1 | Detail |
| C1H3g30312 | 3:12,076,952-12,083,893 | + | C2H3g26883 | CX3g025370 | LOC_Os03g23050 | Os03g0353900 | - | Detail |
| C1H3g22495 | 3:12,093,366-12,095,554 | - | C2H3g03041 | CX3g029597 | LOC_Os03g23920 | Os03g0355300 | - | Detail |
| C1H3g01916 | 3:12,100,470-12,104,510 | + | C2H3g25328 | CX3g025017 | LOC_Os03g23935 | Os03g0355400 | - | Detail |
| C1H3g22764 | 3:12,106,803-12,113,091 | - | C2H3g10284 | CX3g025703 | LOC_Os03g23950 | Os03g0355600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g10310 | 3:10,894,128-10,896,740 | + | C1H3g27306 | CX3g030007 | LOC_Os03g21450 | Os03g0130800 | - | Detail |
| C2H3g17481 | 3:10,896,805-10,900,686 | - | C1H3g15898 | CX3g028069 | LOC_Os03g21460 | Os03g0332400 | GLYII-2, OsGLYII2, GLYII2, OsGLYII-2 | Detail |
| C2H3g22879 | 3:10,904,923-10,906,403 | - | C1H3g21366 | CX3g029311 | LOC_Os11g11390 | Os03g0332500 | - | Detail |
| C2H3g01804 | 3:10,908,596-10,910,611 | - | C1H3g21148 | CX3g027147 | LOC_Os03g21480 | Os03g0332533 | - | Detail |
| C2H3g10583 | 3:10,913,454-10,917,924 | - | C1H3g11764 | CX3g025440 | LOC_Os03g21490 | Os03g0332700 | - | Detail |
| C2H3g24190 | 3:10,924,413-10,929,402 | + | C1H3g02450 | CX3g027316 | LOC_Os03g21510 | Os03g0332900 | - | Detail |
| C2H3g30311 | 3:10,929,734-10,935,090 | - | C1H3g13994 | CX3g028180 | LOC_Os03g21520 | Os03g0333000 | - | Detail |
| C2H3g26938 | 3:10,935,271-10,945,526 | + | C1H3g12459 | CX3g029941 | LOC_Os03g21530 | Os03g0333100 | - | Detail |
| C2H3g19269 | 3:10,946,787-10,949,471 | + | C1H3g29664 | CX3g028103 | LOC_Os03g21540 | Os03g0333200 | DRUS1, OsCrRLK1L8, CrRLK1L8, FLR1 | Detail |
| C2H3g24047 | 3:10,953,705-10,958,206 | + | C1H3g30788 | CX3g028855 | LOC_Os03g21550 | Os03g0333300 | - | Detail |
| C2H3g24886 | 3:10,958,751-10,959,254 | + | C1H3g06087 | CX3g028002 | LOC_Os03g21560 | Os03g0333400 | - | Detail |
| C2H3g01911 | 3:10,962,059-10,966,029 | - | C1H3g12764 | CX3g030167 | LOC_Os03g21620 | Os03g0333500 | - | Detail |
| C2H3g06072 | 3:10,971,787-10,975,855 | + | C1H3g24732 | CX3g030080 | LOC_Os03g21630 | Os03g0334100 | - | Detail |
| C2H3g19486 | 3:10,977,888-10,981,311 | + | C1H3g12242 | CX3g025988 | LOC_Os03g21640 | Os03g0334200 | - | Detail |
| C2H3g01471 | 3:10,981,968-10,982,447 | - | C1H3g12872 | CX3g025425 | LOC_Os03g21650 | Os03g0334300 | - | Detail |
| C2H3g23114 | 3:10,988,613-10,995,631 | + | C1H3g04089 | CX3g028192 | LOC_Os03g21680 | Os03g0334700 | - | Detail |
| C2H3g29675 | 3:10,995,715-11,000,869 | - | C1H3g19863 | CX3g026146 | LOC_Os03g21690 | Os03g0334800 | - | Detail |
| C2H3g22866 | 3:11,003,512-11,004,783 | + | C1H3g05344 | CX3g026406 | LOC_Os03g21700 | Os03g0335100 | - | Detail |
| C2H3g03886 | 3:11,009,746-11,011,541 | + | C1H3g04080 | CX3g025256 | LOC_Os03g21710 | Os03g0335200 | - | Detail |
| C2H3g08004 | 3:11,015,360-11,015,605 | + | C1H3g16339 | CX3g030092 | - | Os07g0676800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |