| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17947 | 3:11,914,153-11,918,845 | - | C2H3g26186 | CX3g027882 | LOC_Os03g22800 | Os03g0351400 | - | Detail |
| C1H3g29229 | 3:11,939,134-11,940,660 | + | C2H3g20435 | CX3g027904 | LOC_Os03g22810 | Os03g0351500 | CSD1 | Detail |
| C1H3g18570 | 3:11,955,593-11,958,092 | - | C2H3g14393 | CX3g025092 | - | - | - | Detail |
| C1H3g11942 | 3:11,959,252-11,960,341 | - | - | CX3g025092 | - | - | - | Detail |
| C1H3g27962 | 3:11,977,336-11,981,389 | + | C2H3g15700 | CX3g027668 | LOC_Os03g22870 | Os03g0352200 | - | Detail |
| C1H3g04417 | 3:11,982,005-11,984,948 | - | C2H3g04437 | CX3g025721 | LOC_Os03g22880 | Os03g0352300 | - | Detail |
| C1H3g10842 | 3:11,986,758-11,991,437 | + | C2H3g25554 | CX3g030381 | LOC_Os03g22890 | Os03g0352400 | OsNug2 | Detail |
| C1H3g16038 | 3:11,996,283-12,007,528 | + | C2H3g13717 | CX3g025999 | LOC_Os03g22900 | Os03g0352500 | OsINO80 | Detail |
| C1H3g08430 | 3:12,023,897-12,025,933 | - | C2H3g17584 | CX3g025916 | LOC_Os03g22950 | Os03g0352800 | OsMTACP2, CTB18 | Detail |
| C1H3g07024 | 3:12,027,840-12,028,877 | + | C2H3g12615 | CX3g029374 | LOC_Os03g22960 | Os03g0353000 | - | Detail |
| C1H3g25359 | 3:12,031,104-12,031,292 | + | C2H3g04581 | - | LOC_Os03g22990 | - | - | Detail |
| C1H3g09018 | 3:12,031,354-12,035,641 | + | C2H3g04581 | CX3g029843 | LOC_Os03g22990 | Os03g0353300 | - | Detail |
| C1H3g12995 | 3:12,035,644-12,035,880 | - | C2H3g21766 | CX3g027651 | LOC_Os03g23000 | Os03g0353333 | - | Detail |
| C1H3g26840 | 3:12,040,577-12,041,744 | + | C2H3g01500 | CX3g026671 | LOC_Os03g23010 | Os03g0353400 | - | Detail |
| C1H3g22809 | 3:12,045,696-12,047,596 | + | C2H3g07846 | CX3g029165 | LOC_Os03g23020 | Os03g0353500 | - | Detail |
| C1H3g12732 | 3:12,048,747-12,064,117 | + | C2H3g26280 | CX3g029602 | LOC_Os03g23030 | Os03g0353600 | OsAPT1 | Detail |
| C1H3g30312 | 3:12,076,952-12,083,893 | + | C2H3g26883 | CX3g025370 | LOC_Os03g23050 | Os03g0353900 | - | Detail |
| C1H3g22495 | 3:12,093,366-12,095,554 | - | C2H3g03041 | CX3g029597 | LOC_Os03g23920 | Os03g0355300 | - | Detail |
| C1H3g01916 | 3:12,100,470-12,104,510 | + | C2H3g25328 | CX3g025017 | LOC_Os03g23935 | Os03g0355400 | - | Detail |
| C1H3g22764 | 3:12,106,803-12,113,091 | - | C2H3g10284 | CX3g025703 | LOC_Os03g23950 | Os03g0355600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g01792 | 12:1,503,350-1,505,550 | - | C1H12g01014 | CX11g013375 | LOC_Os12g03880 | Os12g0133050 | OsP0C | Detail |
| C2H12g17288 | 12:1,508,239-1,515,716 | - | C1H12g17796 | - | LOC_Os12g03899 | Os12g0133100 | OsVMT, OsZIFL12, OsVMT/OsZIFL12 | Detail |
| C2H12g04645 | 12:1,519,049-1,519,559 | - | C1H12g07094 | - | LOC_Os11g04104 | Os12g0133100 | OsVMT, OsZIFL12, OsVMT/OsZIFL12 | Detail |
| C2H12g04214 | 12:1,525,685-1,525,957 | + | C1H12g02841 | CX12g018506 | LOC_Os12g03920 | Os12g0518200 | OsDUF6 | Detail |
| C2H12g02838 | 12:1,528,205-1,529,855 | + | C1H12g21650 | CX12g018506 | LOC_Os12g03920 | Os12g0518200 | OsDUF6 | Detail |
| C2H12g26253 | 12:1,533,283-1,541,952 | - | C1H12g00189 | - | LOC_Os11g04150 | Os12g0133300 | - | Detail |
| C2H12g30444 | 12:1,544,701-1,546,057 | + | C1H12g27817 | CX12g015267 | LOC_Os12g03960 | Os12g0133400 | - | Detail |
| C2H12g10222 | 12:1,546,731-1,548,867 | + | C1H12g15237 | CX12g018659 | LOC_Os12g03970 | Os12g0133500 | OsCPK26 | Detail |
| C2H12g11861 | 12:1,550,525-1,550,722 | - | C1H12g29110 | CX12g015288 | LOC_Os12g03980 | Os12g0133600 | - | Detail |
| C2H12g22177 | 12:1,551,626-1,553,781 | - | C1H12g04680 | CX12g017140 | LOC_Os12g03990 | Os12g0133700 | - | Detail |
| C2H12g11358 | 12:1,557,484-1,560,607 | - | C1H12g21432 | CX12g018350 | LOC_Os12g04000 | Os12g0133800 | OsPIN1d | Detail |
| C2H12g09127 | 12:1,565,767-1,570,389 | - | C1H12g29892 | CX12g018288 | LOC_Os12g04010 | Os12g0133900 | - | Detail |
| C2H12g28374 | 12:1,572,996-1,576,527 | + | C1H12g11846 | CX12g015977 | LOC_Os12g04020 | Os12g0134000 | - | Detail |
| C2H12g25164 | 12:1,576,902-1,592,759 | - | C1H12g20440 | CX12g015093 | LOC_Os12g04030 | Os12g0134200 | - | Detail |
| C2H12g04115 | 12:1,593,008-1,600,168 | + | C1H12g28477 | CX12g016579 | LOC_Os12g04060 | Os12g0134300 | - | Detail |
| C2H12g17966 | 12:1,600,938-1,601,438 | - | C1H12g06754 | CX12g018121 | LOC_Os12g04090 | Os12g0134500 | - | Detail |
| C2H12g01480 | 12:1,601,758-1,603,107 | - | C1H12g27630 | CX12g016834 | LOC_Os12g04080 | Os12g0134700 | - | Detail |
| C2H12g04217 | 12:1,607,335-1,611,027 | - | C1H12g09535 | CX12g018605 | LOC_Os12g04110 | Os12g0135000 | - | Detail |
| C2H12g24794 | 12:1,611,256-1,614,850 | - | C1H12g28951 | CX12g018811 | LOC_Os12g04110 | Os12g0135051 | - | Detail |
| C2H12g14583 | 12:1,617,138-1,618,065 | - | C1H12g20775 | CX12g018811 | LOC_Os12g04120 | Os12g0135100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |