| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g11450 | 3:11,742,033-11,744,372 | - | C2H3g11362 | CX3g028620 | LOC_Os03g22600 | Os03g0347700 | WIN1 | Detail |
| C1H3g13278 | 3:11,750,819-11,753,460 | + | C2H3g23092 | CX3g029493 | LOC_Os03g22610 | Os03g0347800 | - | Detail |
| C1H3g09819 | 3:11,754,484-11,754,729 | - | C2H3g25992 | CX3g030811 | LOC_Os03g22620 | Os03g0347900 | - | Detail |
| C1H3g29577 | 3:11,762,650-11,762,820 | - | C2H3g27837 | - | - | - | - | Detail |
| C1H3g30714 | 3:11,779,139-11,781,386 | - | C2H3g00473 | CX3g028193 | LOC_Os03g22620 | Os03g0347900 | - | Detail |
| C1H3g20953 | 3:11,810,422-11,810,718 | - | C2H3g25992 | CX3g030811 | LOC_Os03g22620 | Os03g0347900 | - | Detail |
| C1H3g07660 | 3:11,818,158-11,820,954 | - | C2H3g19760 | CX3g028363 | LOC_Os03g22634 | Os03g0347900 | - | Detail |
| C1H3g29727 | 3:11,833,728-11,834,487 | - | C2H3g19760 | CX3g028091 | LOC_Os03g22634 | Os03g0348200 | - | Detail |
| C1H3g09351 | 3:11,835,651-11,836,625 | - | - | - | - | - | - | Detail |
| C1H3g00236 | 3:11,839,387-11,842,001 | - | C2H3g19760 | CX3g028193 | LOC_Os03g22634 | Os03g0348200 | - | Detail |
| C1H3g31631 | 3:11,848,768-11,852,149 | - | C2H3g12933 | CX3g028916 | LOC_Os03g22670 | Os03g0348800 | - | Detail |
| C1H3g20465 | 3:11,854,574-11,857,077 | - | C2H3g07266 | CX3g030623 | LOC_Os03g22680 | Os03g0348900 | OsSRFP1, SDEL2 | Detail |
| C1H3g09062 | 3:11,859,083-11,866,557 | - | C2H3g25184 | CX3g026958 | LOC_Os03g22690 | Os03g0349000 | - | Detail |
| C1H3g20024 | 3:11,868,357-11,872,876 | - | C2H3g06309 | CX3g031273 | LOC_Os03g22700 | Os03g0349200 | - | Detail |
| C1H3g13945 | 3:11,877,826-11,881,833 | - | C2H3g24778 | CX3g028742 | LOC_Os03g22730 | Os03g0350100 | - | Detail |
| C1H3g12425 | 3:11,887,278-11,891,178 | - | C2H3g11342 | CX3g025640 | LOC_Os03g22740 | Os03g0350300 | - | Detail |
| C1H3g17589 | 3:11,898,605-11,899,346 | + | C2H3g21910 | CX3g025310 | - | - | - | Detail |
| C1H3g30316 | 3:11,900,791-11,903,962 | + | C2H3g27063 | CX3g027240 | LOC_Os03g22770 | Os03g0351100 | - | Detail |
| C1H3g20290 | 3:11,904,720-11,905,952 | - | C2H3g12969 | CX3g031257 | LOC_Os03g22780 | Os03g0351200 | - | Detail |
| C1H3g29465 | 3:11,911,735-11,913,371 | + | C2H3g03023 | CX3g030954 | LOC_Os03g22790 | Os03g0351300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g28226 | 4:25,141,928-25,144,517 | - | C1H4g09996 | - | LOC_Os04g49130 | Os04g0580400 | OsSCE3 | Detail |
| C2H4g09701 | 4:25,148,467-25,149,423 | - | - | CX4g035401 | LOC_Os04g49140 | Os04g0580500 | - | Detail |
| C2H4g28180 | 4:25,157,517-25,163,020 | + | C1H4g28417 | CX4g036099 | LOC_Os04g49150 | Os04g0580700 | MADS17, OsMADS17, NMADS3, RMADS213, nmads3 | Detail |
| C2H4g29841 | 4:25,165,360-25,165,848 | - | C1H4g23703 | CX4g031640 | LOC_Os04g49160 | Os04g0580800 | OsRFPH2-6 | Detail |
| C2H4g24583 | 4:25,170,519-25,171,040 | - | - | CX4g034669 | LOC_Os04g49170 | Os04g0580866 | - | Detail |
| C2H4g04279 | 4:25,172,890-25,175,528 | - | C1H8g13175 | CX4g033382 | LOC_Os06g36530 | - | - | Detail |
| C2H4g16797 | 4:25,186,392-25,187,121 | + | C1H4g30271 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C2H4g02021 | 4:25,191,095-25,192,198 | + | C1H4g21644 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C2H4g17595 | 4:25,193,950-25,195,360 | - | C1H4g27247 | CX4g034941 | LOC_Os04g49210 | Os04g0581100 | OsSAH3 | Detail |
| C2H4g22618 | 4:25,205,221-25,207,845 | - | C1H4g19809 | CX4g034701 | LOC_Os04g49220 | Os04g0581300 | - | Detail |
| C2H4g25213 | 4:25,221,044-25,222,318 | - | C1H4g15146 | CX4g035204 | LOC_Os04g49230 | Os04g0581400 | RAVL1 | Detail |
| C2H4g07246 | 4:25,264,468-25,264,665 | + | - | CX4g034172 | - | Os04g0581700 | - | Detail |
| C2H4g27357 | 4:25,266,514-25,267,024 | - | C1H4g26375 | CX4g036477 | LOC_Os04g49260 | Os04g0581800 | - | Detail |
| C2H4g21103 | 4:25,268,952-25,273,054 | - | C1H4g04071 | CX4g033493 | LOC_Os04g49270 | Os04g0582000 | OsDNA2_12 | Detail |
| C2H4g08363 | 4:25,274,439-25,278,081 | - | C1H4g14184 | CX4g033493 | LOC_Os04g49310 | Os04g0582600 | OsDNA2_13 | Detail |
| C2H4g08829 | 4:25,279,421-25,279,981 | - | C1H4g14184 | CX4g033493 | - | - | - | Detail |
| C2H4g18439 | 4:25,281,550-25,287,064 | - | C1H4g22667 | CX4g036138 | LOC_Os04g49320 | Os04g0582700 | OsDNA2_10 | Detail |
| C2H4g11122 | 4:25,288,555-25,288,861 | - | C1H4g13543 | CX4g033723 | LOC_Os04g49340 | Os04g0582900 | OsDNA2_11 | Detail |
| C2H4g27939 | 4:25,288,930-25,290,634 | - | C1H4g13543 | CX4g036138 | LOC_Os04g49340 | Os04g0582900 | OsDNA2_11 | Detail |
| C2H4g27086 | 4:25,293,122-25,293,784 | - | C1H4g24238 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |