| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g19573 | 3:11,487,898-11,492,875 | + | C2H3g07847 | CX3g027432 | LOC_Os03g22320 | Os03g0343300 | - | Detail |
| C1H3g04598 | 3:11,494,274-11,497,969 | + | C2H3g27542 | CX3g030144 | LOC_Os03g22330 | Os03g0343400 | - | Detail |
| C1H3g18164 | 3:11,498,563-11,500,164 | - | C2H3g22833 | CX3g027840 | LOC_Os03g22340 | Os03g0343500 | - | Detail |
| C1H3g07503 | 3:11,504,257-11,507,167 | + | C2H3g27042 | CX3g028939 | LOC_Os03g22350 | Os03g0343700 | - | Detail |
| C1H3g24513 | 3:11,517,032-11,521,741 | + | C2H3g07184 | CX3g027723 | LOC_Os03g22380 | Os03g0344100 | OsSR32 | Detail |
| C1H3g14886 | 3:11,525,586-11,527,656 | - | C2H3g20782 | CX3g030547 | LOC_Os03g22390 | Os03g0305400 | OsUSP3 | Detail |
| C1H3g05435 | 3:11,529,322-11,534,415 | - | C2H3g20681 | CX3g030391 | LOC_Os03g22400 | Os03g0344300 | OsFUG1, OsFUG1.3 | Detail |
| C1H3g07428 | 3:11,543,114-11,554,022 | - | C2H3g04996 | CX3g028417 | LOC_Os03g22420 | Os03g0344700 | - | Detail |
| C1H3g00349 | 3:11,559,520-11,563,973 | - | C2H3g03468 | CX3g028111 | LOC_Os03g22430 | Os03g0344900 | - | Detail |
| C1H3g20152 | 3:11,568,909-11,572,969 | - | C2H3g18234 | CX3g028584 | LOC_Os03g22450 | Os03g0345100 | OsRad9, OsRad9.2 | Detail |
| C1H3g20510 | 3:11,573,075-11,574,720 | + | C2H3g01674 | CX3g029736 | LOC_Os03g46490 | Os03g0345200 | - | Detail |
| C1H3g29872 | 3:11,576,589-11,580,652 | - | C2H3g02585 | CX3g029517 | LOC_Os03g22470 | Os03g0345300 | - | Detail |
| C1H3g23882 | 3:11,596,569-11,598,472 | - | C2H3g21914 | CX3g027384 | LOC_Os03g22490 | Os03g0345700 | - | Detail |
| C1H3g04062 | 3:11,634,787-11,635,116 | - | C2H3g16014 | CX3g030360 | LOC_Os03g22510 | Os03g0346200 | ACE1, OsSIN | Detail |
| C1H3g13519 | 3:11,652,610-11,659,058 | + | C2H3g21311 | CX3g029712 | LOC_Os03g22540 | Os03g0346700 | - | Detail |
| C1H3g09102 | 3:11,661,085-11,666,993 | + | C2H3g14665 | CX3g029457 | LOC_Os03g22550 | Os03g0346800 | - | Detail |
| C1H3g03973 | 3:11,668,777-11,674,387 | - | C2H3g24882 | CX3g027020 | LOC_Os03g22560 | Os03g0346900 | - | Detail |
| C1H3g06261 | 3:11,684,740-11,696,373 | + | C2H3g28349 | CX3g030324 | LOC_Os03g22570 | Os03g0347200 | - | Detail |
| C1H3g24032 | 3:11,698,741-11,710,290 | - | C2H3g09980 | CX3g026560 | LOC_Os03g22580 | Os03g0347300 | - | Detail |
| C1H3g06908 | 3:11,714,387-11,716,738 | - | C2H3g05670 | CX3g028295 | LOC_Os03g22590 | Os03g0347500 | OsSWEET12 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H7g05786 | 7:4,212,789-4,215,761 | - | C1H7g00026 | CX7g048929 | LOC_Os07g08750 | Os07g0185000 | - | Detail |
| C2H7g20869 | 7:4,217,714-4,222,053 | - | C1H7g02270 | CX7g050270 | LOC_Os07g08760 | Os07g0185200 | - | Detail |
| C2H7g07159 | 7:4,227,217-4,227,744 | - | - | CX7g046271 | LOC_Os07g08770 | Os07g0185300 | - | Detail |
| C2H7g09570 | 7:4,241,011-4,247,301 | + | C1H7g21233 | CX7g050362 | LOC_Os07g08790 | Os07g0185432 | - | Detail |
| C2H7g02745 | 7:4,255,191-4,262,713 | + | C1H7g04399 | CX7g049699 | LOC_Os07g08810 | Os07g0185700 | - | Detail |
| C2H7g29336 | 7:4,266,820-4,269,949 | + | C1H7g17793 | CX7g048108 | LOC_Os07g08820 | Os07g0185800 | - | Detail |
| C2H7g13139 | 7:4,277,748-4,277,984 | - | C1H7g13541 | CX3g028966 | - | Os07g0185900 | - | Detail |
| C2H7g30045 | 7:4,287,679-4,289,641 | - | C1H7g15110 | CX7g047579 | LOC_Os07g08840 | Os07g0186000 | TRXH, trxh, Trx-H, OsTRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1 | Detail |
| C2H7g25400 | 7:4,304,929-4,307,445 | - | C1H7g16802 | CX7g046706 | LOC_Os07g08860 | Os07g0186200 | SDRLK-SIK2, SIK2, OsSIK2, YK14 | Detail |
| C2H7g00916 | 7:4,311,780-4,314,422 | + | C1H7g31770 | CX7g047241 | LOC_Os07g08880 | Os07g0186400 | OsSHL1 | Detail |
| C2H7g24863 | 7:4,321,609-4,324,329 | + | C1H7g06257 | CX7g047241 | LOC_Os07g08890 | Os07g0186500 | - | Detail |
| C2H7g24828 | 7:4,327,031-4,333,206 | + | C1H7g14544 | CX7g047294 | LOC_Os07g08950 | Os07g0187200 | OsD-LDH2 | Detail |
| C2H7g12614 | 7:4,333,892-4,336,525 | - | C1H7g26846 | CX7g049916 | LOC_Os07g08960 | Os07g0549800 | - | Detail |
| C2H7g29149 | 7:4,337,669-4,341,516 | - | C1H7g27888 | CX7g048853 | LOC_Os07g08970 | Os07g0187400 | - | Detail |
| C2H7g29227 | 7:4,345,945-4,350,142 | + | C1H7g28076 | CX7g047749 | LOC_Os07g09000 | Os07g0187700 | PHF1, OsPHF1, OsWD40-137, OsSEC12 | Detail |
| C2H7g04045 | 7:4,360,372-4,362,273 | + | - | CX7g048678 | LOC_Os07g09010 | Os07g0187900 | - | Detail |
| C2H7g16781 | 7:4,367,052-4,377,051 | - | C1H7g18469 | CX7g050137 | LOC_Os07g09020 | Os07g0188000 | - | Detail |
| C2H7g28352 | 7:4,388,179-4,390,738 | + | C1H7g07933 | CX7g048045 | LOC_Os07g09040 | Os07g0188233 | - | Detail |
| C2H7g22140 | 7:4,392,080-4,393,178 | + | C1H7g27796 | CX7g049512 | LOC_Os07g09040 | Os07g0188266 | - | Detail |
| C2H7g15428 | 7:4,396,177-4,399,976 | + | C1H7g22647 | CX7g048570 | LOC_Os07g09050 | Os07g0188700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |