| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g18174 | 3:11,333,729-11,340,093 | + | C2H3g27756 | CX3g024945 | LOC_Os03g21990 | Os03g0339100 | - | Detail |
| C1H3g23493 | 3:11,341,340-11,343,206 | + | C2H3g08189 | CX3g029752 | LOC_Os03g22010 | Os03g0339300 | - | Detail |
| C1H3g01797 | 3:11,344,157-11,346,285 | + | C2H3g17635 | CX3g029752 | LOC_Os03g22020 | Os03g0434800 | - | Detail |
| C1H3g30937 | 3:11,347,707-11,349,538 | - | C2H3g03307 | CX3g026989 | LOC_Os03g22020 | Os03g0434800 | - | Detail |
| C1H3g22536 | 3:11,357,254-11,360,393 | + | C2H3g17458 | CX3g028644 | LOC_Os03g22040 | Os03g0339700 | - | Detail |
| C1H3g12381 | 3:11,361,187-11,365,355 | - | C2H3g13815 | CX3g029505 | LOC_Os03g22050 | Os03g0339900 | - | Detail |
| C1H3g28303 | 3:11,370,770-11,372,781 | - | C2H3g21418 | CX3g031266 | LOC_Os03g21900 | Os03g0337600 | - | Detail |
| C1H3g04870 | 3:11,374,408-11,375,833 | - | C2H3g25583 | CX3g031266 | LOC_Os03g22060 | Os03g0340001 | - | Detail |
| C1H3g07849 | 3:11,380,862-11,381,335 | + | C2H3g07473 | CX3g031157 | LOC_Os03g22080 | Os03g0340100 | - | Detail |
| C1H3g19641 | 3:11,402,274-11,408,088 | - | C2H3g21937 | CX3g027881 | LOC_Os03g22120 | Os03g0340500 | - | Detail |
| C1H3g22688 | 3:11,412,483-11,414,411 | + | C2H3g11733 | CX3g028679 | LOC_Os03g22140 | Os03g0340700 | - | Detail |
| C1H3g27719 | 3:11,418,298-11,429,943 | + | C2H3g03250 | CX3g031206 | LOC_Os03g22160 | Os03g0340900 | ARE2 | Detail |
| C1H3g08303 | 3:11,436,803-11,437,626 | + | C2H3g25873 | CX3g029548 | LOC_Os03g22170 | Os03g0341000 | ERF66, OsERF66 | Detail |
| C1H3g00753 | 3:11,440,992-11,443,193 | - | C2H3g03921 | CX3g028062 | LOC_Os03g22180 | Os03g0341100 | - | Detail |
| C1H3g18892 | 3:11,444,078-11,449,586 | - | C2H3g07860 | CX3g030546 | LOC_Os03g22190 | Os03g0341200 | - | Detail |
| C1H3g26990 | 3:11,452,552-11,454,640 | + | C2H3g11247 | CX3g027655 | LOC_Os03g22200 | Os03g0341300 | - | Detail |
| C1H3g04911 | 3:11,462,759-11,463,682 | - | C2H3g16648 | - | LOC_Os03g22210 | Os03g0341600 | - | Detail |
| C1H3g20603 | 3:11,472,818-11,473,437 | - | C2H3g10184 | - | LOC_Os03g22230 | Os03g0342100 | - | Detail |
| C1H3g13653 | 3:11,476,272-11,476,821 | - | C2H3g15206 | - | LOC_Os03g22210 | Os03g0341600 | - | Detail |
| C1H3g19465 | 3:11,479,694-11,482,107 | - | C2H3g25012 | CX3g031034 | LOC_Os03g22270 | Os03g0342900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g18413 | 4:29,693,561-29,699,613 | - | C1H4g12099 | CX4g034422 | LOC_Os04g57670 | Os04g0672700 | - | Detail |
| C2H4g13935 | 4:29,701,445-29,704,747 | + | C1H4g02898 | CX4g031387 | LOC_Os04g57680 | Os04g0672800 | - | Detail |
| C2H4g25125 | 4:29,705,783-29,708,184 | + | C1H4g21333 | CX4g034255 | LOC_Os04g57690 | Os04g0672900 | - | Detail |
| C2H4g28032 | 4:29,709,880-29,714,931 | - | C1H4g29753 | CX4g032895 | LOC_Os04g57700 | Os04g0673000 | - | Detail |
| C2H4g17256 | 4:29,737,558-29,738,174 | + | C1H4g17441 | CX4g036002 | LOC_Os04g57720 | Os04g0673300 | RR6, OsRR6, rr6, Rra6, OsRRA6 | Detail |
| C2H4g16666 | 4:29,745,422-29,749,700 | - | C1H4g06545 | CX4g033276 | LOC_Os04g57730 | Os04g0673400 | - | Detail |
| C2H4g21541 | 4:29,752,035-29,752,662 | - | C1H4g12522 | CX4g032931 | LOC_Os04g57750 | Os04g0673800 | - | Detail |
| C2H4g03386 | 4:29,757,348-29,758,304 | - | C1H4g09977 | - | LOC_Os04g57760 | Os04g0674000 | - | Detail |
| C2H4g22422 | 4:29,766,013-29,768,955 | - | C1H4g25879 | CX4g033668 | LOC_Os04g57780 | Os04g0674100 | - | Detail |
| C2H4g06265 | 4:29,774,553-29,775,787 | + | C1H4g19205 | CX4g033580 | LOC_Os04g57790 | Os04g0674200 | - | Detail |
| C2H4g15166 | 4:29,776,488-29,781,050 | - | C1H4g22285 | CX4g034130 | LOC_Os04g57800 | Os04g0674300 | - | Detail |
| C2H4g17817 | 4:29,783,015-29,783,610 | - | C1H4g01102 | - | - | Os04g0674350 | - | Detail |
| C2H4g23831 | 4:29,783,738-29,786,479 | + | C1H4g13095 | CX4g032486 | LOC_Os04g57810 | Os04g0674400 | OsDRE2a | Detail |
| C2H4g13778 | 4:29,789,504-29,794,076 | + | C1H4g14562 | CX4g036032 | LOC_Os04g57819 | Os04g0674450 | - | Detail |
| C2H4g19163 | 4:29,798,804-29,801,306 | + | C1H4g20705 | - | - | - | - | Detail |
| C2H4g22750 | 4:29,802,403-29,805,885 | - | C1H4g25678 | CX4g034412 | LOC_Os04g57840 | Os04g0674600 | - | Detail |
| C2H4g08185 | 4:29,806,506-29,808,620 | - | C1H4g14424 | CX4g034499 | LOC_Os04g57850 | Os04g0674700 | OsBIABP1 | Detail |
| C2H4g18901 | 4:29,812,600-29,815,642 | - | C1H4g31604 | CX4g031749 | LOC_Os04g57860 | Os04g0674800 | OsRHC | Detail |
| C2H4g07191 | 4:29,818,808-29,824,861 | - | C1H4g22329 | CX4g034095 | LOC_Os04g57870 | Os04g0675000 | - | Detail |
| C2H4g13536 | 4:29,834,270-29,853,732 | + | C1H4g08555 | CX4g033430 | - | Os04g0675300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |