| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08986 | 3:11,128,853-11,130,496 | + | C2H3g27980 | CX3g026570 | LOC_Os03g21780 | Os03g0336000 | - | Detail |
| C1H3g23089 | 3:11,131,255-11,133,411 | - | C2H3g07010 | CX3g026449 | LOC_Os03g21790 | Os03g0336100 | FLOC3 | Detail |
| C1H3g19738 | 3:11,136,064-11,139,294 | + | C2H3g10640 | CX3g026687 | LOC_Os03g21800 | Os03g0336200 | - | Detail |
| C1H3g27626 | 3:11,143,575-11,154,159 | + | C2H3g27830 | CX3g028160 | LOC_Os03g21810 | Os03g0336300 | - | Detail |
| C1H3g30217 | 3:11,154,816-11,155,709 | - | C2H3g18341 | CX3g030935 | LOC_Os03g21820 | Os03g0336400 | - | Detail |
| C1H3g28885 | 3:11,169,242-11,172,338 | + | C2H3g17317 | CX3g028604 | LOC_Os03g21830 | Os03g0336500 | - | Detail |
| C1H3g10280 | 3:11,173,500-11,175,446 | - | C2H3g25854 | CX3g028387 | LOC_Os03g21840 | Os03g0336600 | - | Detail |
| C1H3g24720 | 3:11,178,138-11,181,445 | - | C2H3g04362 | - | - | - | - | Detail |
| C1H3g01271 | 3:11,191,795-11,198,911 | + | C2H3g05433 | CX3g031093 | LOC_Os03g21850 | Os03g0336700 | - | Detail |
| C1H3g17351 | 3:11,211,186-11,212,106 | - | C2H3g01245 | CX3g028904 | LOC_Os03g21870 | Os03g0336900 | - | Detail |
| C1H3g11607 | 3:11,217,673-11,217,930 | + | - | CX3g025352 | LOC_Os03g21880 | Os03g0337000 | - | Detail |
| C1H3g00780 | 3:11,223,405-11,224,102 | - | C2H3g01707 | CX3g028881 | - | - | - | Detail |
| C1H3g03171 | 3:11,227,280-11,237,870 | + | C2H3g03273 | CX3g031266 | LOC_Os03g21890 | Os03g0337500 | OsHAK8 | Detail |
| C1H3g23175 | 3:11,239,163-11,243,862 | - | C2H3g09138 | CX3g025972 | LOC_Os03g21914 | Os03g0714400 | - | Detail |
| C1H3g14863 | 3:11,245,308-11,247,551 | - | C2H3g27608 | CX3g028145 | LOC_Os03g21940 | Os03g0337800 | - | Detail |
| C1H3g25051 | 3:11,249,078-11,255,269 | - | C2H3g02212 | CX3g030549 | LOC_Os03g21950 | Os03g0337900 | - | Detail |
| C1H3g24711 | 3:11,260,550-11,263,372 | - | C2H3g08593 | CX3g028858 | LOC_Os03g21960 | Os03g0338000 | - | Detail |
| C1H3g23812 | 3:11,292,970-11,295,206 | + | C2H3g29715 | CX3g025638 | LOC_Os03g21970 | Os03g0338400 | - | Detail |
| C1H3g31030 | 3:11,297,782-11,301,352 | - | C2H3g29506 | CX3g030282 | LOC_Os03g21980 | Os03g0338600 | - | Detail |
| C1H3g02489 | 3:11,333,288-11,333,906 | - | C2H3g21921 | CX3g028477 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g03998 | 1:2,164,077-2,165,131 | - | C1H1g29078 | CX1g003888 | LOC_Os01g05370 | Os01g0144800 | - | Detail |
| C2H1g05408 | 1:2,174,818-2,178,246 | + | C1H1g29078 | CX1g003888 | LOC_Os01g05410 | Os01g0147001 | - | Detail |
| C2H1g08018 | 1:2,185,334-2,189,822 | + | C1H1g18605 | CX1g000323 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| C2H1g25573 | 1:2,191,220-2,194,402 | + | C1H1g08705 | CX1g001325 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| C2H1g12465 | 1:2,194,554-2,196,403 | - | C1H1g07217 | CX1g003030 | LOC_Os01g05440 | Os01g0147400 | - | Detail |
| C2H1g27793 | 1:2,197,356-2,199,409 | - | C1H1g03816 | - | LOC_Os01g05450 | Os01g0147600 | - | Detail |
| C2H1g00931 | 1:2,200,826-2,203,456 | - | C1H1g25686 | - | LOC_Os01g05460 | Os01g0147600 | - | Detail |
| C2H1g02244 | 1:2,205,153-2,207,498 | - | C1H1g30607 | CX1g003030 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| C2H1g25353 | 1:2,210,513-2,219,278 | - | C1H1g11928 | CX1g003030 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| C2H1g29480 | 1:2,221,494-2,225,565 | - | C1H1g17304 | CX1g005120 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| C2H1g30066 | 1:2,226,864-2,230,987 | - | C1H1g08404 | CX1g006525 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| C2H1g25150 | 1:2,236,272-2,249,202 | + | C1H1g03903 | CX1g001423 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| C2H1g10498 | 1:2,256,405-2,259,371 | - | C1H1g24472 | CX1g005368 | LOC_Os01g05620 | Os01g0149500 | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59 | Detail |
| C2H1g18971 | 1:2,261,730-2,262,191 | + | C1H1g09766 | CX1g005739 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| C2H1g06791 | 1:2,263,340-2,266,739 | - | C1H1g22469 | CX1g006643 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| C2H1g28846 | 1:2,268,550-2,269,982 | - | C1H1g18521 | - | LOC_Os01g05650 | Os01g0149800 | - | Detail |
| C2H1g25044 | 1:2,274,627-2,278,471 | - | C1H1g17924 | CX1g006502 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| C2H1g00511 | 1:2,283,854-2,287,505 | - | C1H1g30008 | CX1g002286 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| C2H1g17834 | 1:2,289,627-2,293,258 | + | C1H1g15806 | CX1g000079 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| C2H1g21300 | 1:2,294,207-2,296,973 | + | C1H1g24721 | CX4g035052 | LOC_Os01g05694 | Os01g0150200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |