| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g31035 | 3:10,734,431-10,738,180 | - | C2H3g29789 | CX3g027049 | LOC_Os03g21090 | Os03g0328100 | - | Detail |
| C1H3g04874 | 3:10,742,903-10,744,374 | + | C2H3g13174 | CX3g029317 | LOC_Os03g21110 | Os03g0328300 | - | Detail |
| C1H3g01487 | 3:10,744,989-10,750,505 | - | C2H3g07542 | CX3g030285 | LOC_Os03g21120 | Os03g0328400 | OsAPY1 | Detail |
| C1H3g07714 | 3:10,770,973-10,775,361 | + | C2H3g24667 | CX3g028818 | LOC_Os03g21140 | Os03g0328900 | - | Detail |
| C1H3g05140 | 3:10,804,831-10,808,817 | + | C2H3g06727 | CX3g027853 | LOC_Os03g21160 | Os03g0329200 | - | Detail |
| C1H3g26417 | 3:10,823,979-10,827,654 | - | C2H3g01256 | CX3g029596 | LOC_Os03g21210 | Os03g0329500 | OsGH9A1, OsGLU1 | Detail |
| C1H3g12540 | 3:10,836,268-10,841,587 | + | C2H3g20489 | CX3g030183 | LOC_Os03g21230 | Os03g0329700 | - | Detail |
| C1H3g04812 | 3:10,845,364-10,850,533 | + | C2H3g04364 | CX3g028538 | LOC_Os03g21240 | Os03g0329900 | PHR1, OsPHR1 | Detail |
| C1H3g28228 | 3:10,853,063-10,857,976 | - | C2H3g14604 | CX3g025595 | LOC_Os03g21250 | Os03g0330000 | - | Detail |
| C1H3g13172 | 3:10,868,496-10,872,782 | + | C2H3g27204 | CX3g026436 | LOC_Os03g21260 | Os03g0330200 | - | Detail |
| C1H3g07101 | 3:10,873,255-10,879,738 | - | C2H3g15921 | CX3g027510 | LOC_Os03g21270 | Os03g0330300 | - | Detail |
| C1H3g17399 | 3:10,898,055-10,901,450 | + | C2H3g16525 | CX3g030370 | LOC_Os03g21370 | Os03g0331600 | CS3, OsLCAA | Detail |
| C1H3g03324 | 3:10,903,707-10,904,282 | - | C2H3g29448 | CX3g028976 | LOC_Os03g21380 | Os03g0331700 | - | Detail |
| C1H3g28515 | 3:10,909,223-10,910,838 | + | C2H3g00436 | CX3g026949 | LOC_Os03g21390 | Os03g0331900 | - | Detail |
| C1H3g12262 | 3:10,912,950-10,915,810 | - | C2H3g08774 | CX3g025397 | LOC_Os03g21400 | Os03g0332100 | CYP714B2 | Detail |
| C1H3g15931 | 3:10,920,853-10,921,678 | - | C2H3g14433 | CX3g025397 | LOC_Os03g21419 | Os03g0332100 | CYP714B2 | Detail |
| C1H3g27306 | 3:10,936,456-10,939,067 | + | C2H3g10310 | CX3g030007 | LOC_Os03g21450 | Os03g0130800 | - | Detail |
| C1H3g15898 | 3:10,939,132-10,942,188 | - | C2H3g17481 | CX3g028069 | LOC_Os03g21460 | Os03g0332400 | GLYII-2, OsGLYII2, GLYII2, OsGLYII-2 | Detail |
| C1H3g21366 | 3:10,947,735-10,949,550 | - | C2H3g22879 | CX3g029311 | LOC_Os11g11390 | Os03g0332500 | - | Detail |
| C1H3g21148 | 3:10,951,828-10,953,851 | - | C2H3g01804 | CX3g027147 | LOC_Os03g21480 | Os03g0332533 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H11g04679 | 11:3,989,364-3,993,344 | + | C1H11g13314 | CX11g013500 | LOC_Os11g09010 | Os11g0195500 | OsPAD4 | Detail |
| C2H11g05780 | 11:4,004,158-4,005,788 | + | C1H11g04578 | CX11g012441 | LOC_Os11g09020 | Os11g0195600 | OsAAP11 | Detail |
| C2H11g17811 | 11:4,065,507-4,070,096 | - | C1H11g31883 | - | - | - | - | Detail |
| C2H11g26279 | 11:4,072,489-4,074,968 | - | C1H11g26407 | - | - | - | - | Detail |
| C2H11g28467 | 11:4,075,482-4,080,464 | - | C1H11g09685 | CX11g012245 | LOC_Os11g09140 | Os11g0197400 | - | Detail |
| C2H11g02485 | 11:4,105,753-4,110,864 | - | C1H11g10557 | CX11g011412 | LOC_Os11g09160 | Os11g0197600 | - | Detail |
| C2H11g28538 | 11:4,127,257-4,132,175 | + | C1H11g19517 | CX11g011274 | LOC_Os11g09170 | Os11g0198100 | - | Detail |
| C2H11g29069 | 11:4,151,997-4,154,411 | + | C1H11g31014 | CX11g010986 | LOC_Os11g09220 | Os11g0182500 | - | Detail |
| C2H11g23026 | 11:4,157,178-4,159,154 | + | C1H11g19190 | CX11g013145 | LOC_Os11g09230 | Os11g0198900 | - | Detail |
| C2H11g10077 | 11:4,174,130-4,174,994 | - | C1H11g00448 | CX11g014849 | LOC_Os11g09230 | Os11g0199000 | - | Detail |
| C2H11g18244 | 11:4,187,227-4,188,007 | - | C1H11g23799 | CX11g010986 | LOC_Os11g09270 | Os11g0182500 | - | Detail |
| C2H11g07711 | 11:4,195,058-4,198,861 | - | C1H11g03398 | CX11g013890 | LOC_Os11g09280 | Os11g0199200 | - | Detail |
| C2H11g30384 | 11:4,204,962-4,211,285 | - | C1H11g19280 | CX11g014557 | LOC_Os11g09329 | Os11g0199700 | - | Detail |
| C2H11g00383 | 11:4,217,797-4,218,753 | - | C1H11g29549 | - | LOC_Os11g09350 | Os11g0199801 | - | Detail |
| C2H11g27851 | 11:4,240,072-4,241,924 | - | C1H11g23761 | CX11g013919 | LOC_Os11g09395 | Os11g0208300 | - | Detail |
| C2H11g08475 | 11:4,248,468-4,251,468 | + | C1H11g17474 | CX11g013919 | LOC_Os11g09418 | Os11g0200600 | - | Detail |
| C2H11g12802 | 11:4,256,130-4,264,594 | - | C1H11g31479 | CX11g012962 | LOC_Os11g09474 | Os11g0200950 | - | Detail |
| C2H11g03028 | 11:4,269,053-4,271,117 | - | C1H11g15136 | CX11g012933 | LOC_Os11g09474 | Os11g0201299 | - | Detail |
| C2H11g00771 | 11:4,271,761-4,275,617 | - | C1H11g10401 | CX11g012933 | LOC_Os11g09478 | Os11g0201360 | - | Detail |
| C2H11g05815 | 11:4,340,228-4,341,874 | - | C1H11g18080 | CX11g012933 | LOC_Os11g09600 | Os11g0205900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |