| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g31035 | 3:10,734,431-10,738,180 | - | C2H3g29789 | CX3g027049 | LOC_Os03g21090 | Os03g0328100 | - | Detail |
| C1H3g04874 | 3:10,742,903-10,744,374 | + | C2H3g13174 | CX3g029317 | LOC_Os03g21110 | Os03g0328300 | - | Detail |
| C1H3g01487 | 3:10,744,989-10,750,505 | - | C2H3g07542 | CX3g030285 | LOC_Os03g21120 | Os03g0328400 | OsAPY1 | Detail |
| C1H3g07714 | 3:10,770,973-10,775,361 | + | C2H3g24667 | CX3g028818 | LOC_Os03g21140 | Os03g0328900 | - | Detail |
| C1H3g05140 | 3:10,804,831-10,808,817 | + | C2H3g06727 | CX3g027853 | LOC_Os03g21160 | Os03g0329200 | - | Detail |
| C1H3g26417 | 3:10,823,979-10,827,654 | - | C2H3g01256 | CX3g029596 | LOC_Os03g21210 | Os03g0329500 | OsGH9A1, OsGLU1 | Detail |
| C1H3g12540 | 3:10,836,268-10,841,587 | + | C2H3g20489 | CX3g030183 | LOC_Os03g21230 | Os03g0329700 | - | Detail |
| C1H3g04812 | 3:10,845,364-10,850,533 | + | C2H3g04364 | CX3g028538 | LOC_Os03g21240 | Os03g0329900 | PHR1, OsPHR1 | Detail |
| C1H3g28228 | 3:10,853,063-10,857,976 | - | C2H3g14604 | CX3g025595 | LOC_Os03g21250 | Os03g0330000 | - | Detail |
| C1H3g13172 | 3:10,868,496-10,872,782 | + | C2H3g27204 | CX3g026436 | LOC_Os03g21260 | Os03g0330200 | - | Detail |
| C1H3g07101 | 3:10,873,255-10,879,738 | - | C2H3g15921 | CX3g027510 | LOC_Os03g21270 | Os03g0330300 | - | Detail |
| C1H3g17399 | 3:10,898,055-10,901,450 | + | C2H3g16525 | CX3g030370 | LOC_Os03g21370 | Os03g0331600 | CS3, OsLCAA | Detail |
| C1H3g03324 | 3:10,903,707-10,904,282 | - | C2H3g29448 | CX3g028976 | LOC_Os03g21380 | Os03g0331700 | - | Detail |
| C1H3g28515 | 3:10,909,223-10,910,838 | + | C2H3g00436 | CX3g026949 | LOC_Os03g21390 | Os03g0331900 | - | Detail |
| C1H3g12262 | 3:10,912,950-10,915,810 | - | C2H3g08774 | CX3g025397 | LOC_Os03g21400 | Os03g0332100 | CYP714B2 | Detail |
| C1H3g15931 | 3:10,920,853-10,921,678 | - | C2H3g14433 | CX3g025397 | LOC_Os03g21419 | Os03g0332100 | CYP714B2 | Detail |
| C1H3g27306 | 3:10,936,456-10,939,067 | + | C2H3g10310 | CX3g030007 | LOC_Os03g21450 | Os03g0130800 | - | Detail |
| C1H3g15898 | 3:10,939,132-10,942,188 | - | C2H3g17481 | CX3g028069 | LOC_Os03g21460 | Os03g0332400 | GLYII-2, OsGLYII2, GLYII2, OsGLYII-2 | Detail |
| C1H3g21366 | 3:10,947,735-10,949,550 | - | C2H3g22879 | CX3g029311 | LOC_Os11g11390 | Os03g0332500 | - | Detail |
| C1H3g21148 | 3:10,951,828-10,953,851 | - | C2H3g01804 | CX3g027147 | LOC_Os03g21480 | Os03g0332533 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g06818 | 1:28,526,393-28,526,861 | + | C1H1g21149 | CX1g003072 | LOC_Os01g55510 | Os01g0760000 | - | Detail |
| C2H1g24110 | 1:28,529,762-28,531,888 | + | C1H1g04922 | CX1g005270 | LOC_Os01g55520 | Os01g0760300 | OsRopGEF8 | Detail |
| C2H1g28840 | 1:28,534,612-28,537,620 | - | C1H1g22131 | CX1g005505 | LOC_Os01g55530 | Os01g0760400 | - | Detail |
| C2H1g30012 | 1:28,541,096-28,546,131 | - | C1H1g24669 | CX1g003690 | LOC_Os01g55540 | Os01g0760600 | - | Detail |
| C2H1g07156 | 1:28,547,738-28,551,133 | - | C1H1g26811 | CX1g007126 | LOC_Os01g55549 | Os01g0760800 | OsGL2 | Detail |
| C2H1g22947 | 1:28,552,475-28,554,824 | - | C1H1g11405 | CX1g001192 | LOC_Os01g55560 | Os01g0760900 | - | Detail |
| C2H1g14280 | 1:28,554,877-28,557,714 | + | C1H1g01758 | CX1g003567 | LOC_Os01g55570 | Os01g0761000 | - | Detail |
| C2H1g02714 | 1:28,557,818-28,564,147 | - | C1H1g03450 | CX1g001741 | LOC_Os01g55580 | Os01g0761100 | - | Detail |
| C2H1g29776 | 1:28,571,953-28,578,652 | + | C1H1g17949 | CX1g001107 | LOC_Os01g55590 | Os01g0761300 | - | Detail |
| C2H1g30373 | 1:28,578,839-28,581,019 | - | C1H1g13293 | CX1g004639 | LOC_Os01g55600 | Os01g0761400 | - | Detail |
| C2H1g11332 | 1:28,584,407-28,586,426 | - | C1H1g18764 | CX1g005836 | LOC_Os01g55610 | Os01g0761500 | - | Detail |
| C2H1g16819 | 1:28,595,673-28,597,442 | + | C1H1g08828 | CX1g006499 | LOC_Os01g55690 | Os01g0762500 | GluA-1 | Detail |
| C2H1g22476 | 1:28,601,449-28,602,425 | + | C1H1g25958 | CX1g002406 | LOC_Os01g55640 | Os01g0761900 | - | Detail |
| C2H1g16751 | 1:28,602,563-28,607,133 | - | C1H1g07257 | CX1g004093 | LOC_Os01g55650 | Os01g0762000 | - | Detail |
| C2H1g07048 | 1:28,608,858-28,609,964 | - | C1H1g22782 | - | LOC_Os01g55670 | Os01g0762300 | - | Detail |
| C2H1g10676 | 1:28,610,622-28,612,633 | - | C1H1g21751 | - | LOC_Os01g55700 | Os01g0762400 | - | Detail |
| C2H1g14975 | 1:28,614,432-28,616,206 | + | C1H1g08828 | CX1g005220 | LOC_Os01g55690 | Os01g0762500 | GluA-1 | Detail |
| C2H1g07008 | 1:28,617,059-28,620,014 | - | C1H1g15736 | CX1g000972 | LOC_Os01g55700 | Os01g0762400 | - | Detail |
| C2H1g29169 | 1:28,625,528-28,628,623 | - | C1H1g29162 | CX1g006292 | LOC_Os01g55730 | Os01g0763000 | - | Detail |
| C2H1g11671 | 1:28,628,942-28,633,361 | + | C1H1g04887 | CX1g000567 | LOC_Os01g55740 | Os01g0763100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |