| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g31035 | 3:10,734,431-10,738,180 | - | C2H3g29789 | CX3g027049 | LOC_Os03g21090 | Os03g0328100 | - | Detail |
| C1H3g04874 | 3:10,742,903-10,744,374 | + | C2H3g13174 | CX3g029317 | LOC_Os03g21110 | Os03g0328300 | - | Detail |
| C1H3g01487 | 3:10,744,989-10,750,505 | - | C2H3g07542 | CX3g030285 | LOC_Os03g21120 | Os03g0328400 | OsAPY1 | Detail |
| C1H3g07714 | 3:10,770,973-10,775,361 | + | C2H3g24667 | CX3g028818 | LOC_Os03g21140 | Os03g0328900 | - | Detail |
| C1H3g05140 | 3:10,804,831-10,808,817 | + | C2H3g06727 | CX3g027853 | LOC_Os03g21160 | Os03g0329200 | - | Detail |
| C1H3g26417 | 3:10,823,979-10,827,654 | - | C2H3g01256 | CX3g029596 | LOC_Os03g21210 | Os03g0329500 | OsGH9A1, OsGLU1 | Detail |
| C1H3g12540 | 3:10,836,268-10,841,587 | + | C2H3g20489 | CX3g030183 | LOC_Os03g21230 | Os03g0329700 | - | Detail |
| C1H3g04812 | 3:10,845,364-10,850,533 | + | C2H3g04364 | CX3g028538 | LOC_Os03g21240 | Os03g0329900 | PHR1, OsPHR1 | Detail |
| C1H3g28228 | 3:10,853,063-10,857,976 | - | C2H3g14604 | CX3g025595 | LOC_Os03g21250 | Os03g0330000 | - | Detail |
| C1H3g13172 | 3:10,868,496-10,872,782 | + | C2H3g27204 | CX3g026436 | LOC_Os03g21260 | Os03g0330200 | - | Detail |
| C1H3g07101 | 3:10,873,255-10,879,738 | - | C2H3g15921 | CX3g027510 | LOC_Os03g21270 | Os03g0330300 | - | Detail |
| C1H3g17399 | 3:10,898,055-10,901,450 | + | C2H3g16525 | CX3g030370 | LOC_Os03g21370 | Os03g0331600 | CS3, OsLCAA | Detail |
| C1H3g03324 | 3:10,903,707-10,904,282 | - | C2H3g29448 | CX3g028976 | LOC_Os03g21380 | Os03g0331700 | - | Detail |
| C1H3g28515 | 3:10,909,223-10,910,838 | + | C2H3g00436 | CX3g026949 | LOC_Os03g21390 | Os03g0331900 | - | Detail |
| C1H3g12262 | 3:10,912,950-10,915,810 | - | C2H3g08774 | CX3g025397 | LOC_Os03g21400 | Os03g0332100 | CYP714B2 | Detail |
| C1H3g15931 | 3:10,920,853-10,921,678 | - | C2H3g14433 | CX3g025397 | LOC_Os03g21419 | Os03g0332100 | CYP714B2 | Detail |
| C1H3g27306 | 3:10,936,456-10,939,067 | + | C2H3g10310 | CX3g030007 | LOC_Os03g21450 | Os03g0130800 | - | Detail |
| C1H3g15898 | 3:10,939,132-10,942,188 | - | C2H3g17481 | CX3g028069 | LOC_Os03g21460 | Os03g0332400 | GLYII-2, OsGLYII2, GLYII2, OsGLYII-2 | Detail |
| C1H3g21366 | 3:10,947,735-10,949,550 | - | C2H3g22879 | CX3g029311 | LOC_Os11g11390 | Os03g0332500 | - | Detail |
| C1H3g21148 | 3:10,951,828-10,953,851 | - | C2H3g01804 | CX3g027147 | LOC_Os03g21480 | Os03g0332533 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H7g29343 | 7:24,347,946-24,348,963 | + | C1H7g11562 | CX7g048349 | LOC_Os07g48870 | Os07g0688200 | Os2R_MYB73 | Detail |
| C2H7g06189 | 7:24,354,145-24,358,261 | - | C1H7g28040 | CX7g046739 | LOC_Os07g48880 | Os07g0688300 | - | Detail |
| C2H7g07644 | 7:24,359,435-24,363,360 | + | C1H7g03741 | CX7g046902 | LOC_Os07g48890 | Os07g0688500 | - | Detail |
| C2H7g21846 | 7:24,377,522-24,383,445 | - | C1H7g02128 | CX7g050248 | LOC_Os07g48920 | Os07g0688800 | OsALDH22 | Detail |
| C2H7g21350 | 7:24,393,514-24,404,225 | - | C1H7g08506 | CX7g047041 | LOC_Os07g48960 | Os07g0689300 | - | Detail |
| C2H7g18084 | 7:24,404,958-24,412,370 | + | C1H7g21877 | CX7g046135 | LOC_Os07g48970 | Os07g0689400 | - | Detail |
| C2H7g06577 | 7:24,441,155-24,443,892 | + | C1H7g28138 | CX7g046791 | LOC_Os07g49000 | Os07g0689800 | - | Detail |
| C2H7g30101 | 7:24,446,284-24,452,439 | - | C1H7g13596 | CX7g048170 | LOC_Os07g49010 | Os07g0689950 | - | Detail |
| C2H7g27700 | 7:24,454,692-24,458,960 | - | C1H7g00612 | CX7g048957 | LOC_Os07g49030 | Os07g0690300 | - | Detail |
| C2H7g23297 | 7:24,464,178-24,467,628 | + | C1H7g03649 | CX7g049955 | LOC_Os07g49040 | Os07g0690400 | - | Detail |
| C2H7g13976 | 7:24,473,941-24,475,752 | + | C1H7g15930 | CX7g049945 | LOC_Os07g49100 | Os07g0691100 | - | Detail |
| C2H7g11373 | 7:24,479,277-24,488,532 | + | C1H7g28726 | CX7g048286 | LOC_Os07g49110 | Os07g0691200 | - | Detail |
| C2H7g15372 | 7:24,499,769-24,500,858 | - | C1H7g06988 | CX7g046808 | LOC_Os07g49120 | Os07g0691600 | - | Detail |
| C2H7g24421 | 7:24,512,499-24,516,850 | + | C1H7g25025 | CX7g047543 | LOC_Os07g49140 | Os07g0691700 | - | Detail |
| C2H7g10677 | 7:24,517,120-24,521,376 | - | C1H7g11973 | CX7g046775 | LOC_Os07g49150 | Os07g0691800 | - | Detail |
| C2H7g25839 | 7:24,523,963-24,524,647 | - | C1H7g30038 | CX7g049604 | LOC_Os07g49200 | Os07g0692200 | - | Detail |
| C2H7g15701 | 7:24,532,295-24,538,979 | + | C1H7g15140 | CX7g048386 | LOC_Os07g49210 | Os07g0692600 | CLSY1 | Detail |
| C2H7g00427 | 7:24,539,776-24,542,083 | - | C1H7g20586 | CX7g048032 | LOC_Os07g49220 | Os07g0692800 | - | Detail |
| C2H7g11098 | 7:24,542,260-24,547,137 | + | C1H7g14766 | CX7g049536 | LOC_Os07g49230 | Os07g0692900 | - | Detail |
| C2H7g23736 | 7:24,548,106-24,550,890 | + | C1H7g14039 | CX7g047523 | LOC_Os07g49240 | Os07g0693000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |