| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24166 | 3:10,368,569-10,374,959 | - | C2H3g16949 | CX3g027287 | LOC_Os03g20530 | Os03g0321500 | OsBBP1 | Detail |
| C1H3g22188 | 3:10,389,153-10,390,196 | + | C2H3g07472 | CX3g030570 | LOC_Os03g20550 | Os03g0321700 | OsWRKY31, OsWRKY55 | Detail |
| C1H3g31320 | 3:10,391,340-10,392,065 | - | C2H3g22893 | CX3g029278 | LOC_Os03g20560 | Os03g0321800 | - | Detail |
| C1H3g15973 | 3:10,392,341-10,393,283 | + | C2H3g22031 | CX3g025622 | LOC_Os03g20570 | Os03g0321900 | - | Detail |
| C1H3g10139 | 3:10,395,125-10,401,411 | - | C2H3g29406 | CX3g027052 | LOC_Os03g20580 | Os03g0322000 | - | Detail |
| C1H3g01616 | 3:10,401,796-10,402,290 | + | C2H3g13047 | CX3g026700 | LOC_Os03g20590 | - | - | Detail |
| C1H3g09864 | 3:10,402,723-10,403,079 | - | C2H3g25454 | CX3g029175 | LOC_Os03g20600 | Os03g0322200 | - | Detail |
| C1H3g20781 | 3:10,405,477-10,410,096 | + | C2H3g26982 | CX3g026757 | LOC_Os03g20630 | Os03g0322500 | - | Detail |
| C1H3g30541 | 3:10,410,658-10,412,920 | + | C2H3g00494 | CX3g029187 | LOC_Os03g20640 | Os03g0322600 | - | Detail |
| C1H3g17698 | 3:10,413,261-10,416,734 | - | C2H3g22567 | CX3g029676 | LOC_Os03g20650 | Os03g0322700 | - | Detail |
| C1H3g30170 | 3:10,426,497-10,430,175 | + | C2H3g08879 | CX3g029908 | LOC_Os03g20670 | Os03g0322800 | - | Detail |
| C1H3g03964 | 3:10,434,557-10,435,673 | - | C2H3g26182 | CX3g027559 | LOC_Os03g20680 | Os03g0322900 | LEA17, OsLEA17, OsLEA3-2, LEA3-2 | Detail |
| C1H3g25408 | 3:10,441,031-10,447,096 | + | - | - | - | - | - | Detail |
| C1H3g04844 | 3:10,450,166-10,455,634 | + | C2H3g04983 | CX3g028829 | LOC_Os03g20720 | Os03g0323500 | - | Detail |
| C1H3g01461 | 3:10,456,139-10,456,651 | - | C2H3g18862 | CX3g028214 | LOC_Os03g20730 | Os03g0323600 | - | Detail |
| C1H3g26967 | 3:10,465,665-10,471,153 | + | C2H3g17326 | CX3g025044 | LOC_Os03g20750 | Os03g0323800 | OsVDAC8 | Detail |
| C1H3g06354 | 3:10,475,868-10,477,209 | + | C2H3g13354 | CX3g030983 | LOC_Os03g20760 | Os03g0323900 | - | Detail |
| C1H3g25962 | 3:10,496,675-10,498,600 | + | C2H3g07692 | CX3g027267 | LOC_Os03g20790 | Os03g0324300 | - | Detail |
| C1H3g16108 | 3:10,509,294-10,512,515 | - | C2H3g01747 | CX3g029464 | LOC_Os03g20840 | Os03g0324600 | - | Detail |
| C1H3g01814 | 3:10,532,750-10,535,651 | + | C2H3g25599 | CX3g030289 | LOC_Os03g20850 | Os03g0324700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g06941 | 3:6,907,336-6,907,726 | - | C1H3g19279 | CX3g029955 | - | Os03g0694500 | - | Detail |
| C2H3g25743 | 3:6,909,300-6,916,105 | - | C1H3g02498 | CX3g027180 | LOC_Os03g14420 | Os03g0248200 | - | Detail |
| C2H3g13230 | 3:6,911,574-6,912,086 | + | - | - | - | Os03g0248250 | - | Detail |
| C2H3g17020 | 3:6,918,196-6,918,735 | - | C1H3g05151 | CX3g030378 | LOC_Os03g14440 | Os03g0248500 | - | Detail |
| C2H3g16902 | 3:6,921,192-6,925,966 | - | C1H3g19724 | CX3g028551 | LOC_Os03g14450 | Os03g0248600 | - | Detail |
| C2H3g26557 | 3:6,934,995-6,936,685 | + | C1H3g21569 | CX3g029611 | LOC_Os03g14500 | Os03g0249100 | - | Detail |
| C2H3g29515 | 3:6,937,053-6,940,377 | + | C1H3g23105 | CX3g029820 | LOC_Os03g14510 | Os03g0249200 | - | Detail |
| C2H3g01671 | 3:6,943,851-6,946,831 | + | C1H3g11399 | CX3g027233 | LOC_Os03g14520 | Os03g0249300 | - | Detail |
| C2H3g21948 | 3:6,947,518-6,949,171 | + | C1H3g07919 | CX3g027067 | LOC_Os03g14530 | Os03g0249400 | - | Detail |
| C2H3g26153 | 3:6,951,963-6,953,417 | + | C1H3g04860 | CX3g026238 | LOC_Os03g14540 | Os03g0249500 | - | Detail |
| C2H3g22650 | 3:6,958,048-6,958,686 | + | C1H3g27147 | CX3g026981 | LOC_Os03g14550 | Os03g0760800 | GASR1, OsGASR1 | Detail |
| C2H3g02802 | 3:6,969,663-6,970,055 | - | C1H3g11524 | CX3g027321 | LOC_Os03g14570 | Os03g0249700 | - | Detail |
| C2H3g12837 | 3:6,974,571-6,976,865 | + | C1H3g00105 | CX3g026249 | LOC_Os03g14580 | Os03g0249900 | - | Detail |
| C2H3g11625 | 3:6,977,707-6,981,203 | - | C1H3g21182 | CX3g029360 | LOC_Os03g14590 | Os03g0250000 | - | Detail |
| C2H3g05440 | 3:6,983,794-6,989,095 | - | C1H3g01522 | CX3g030683 | LOC_Os03g14610 | Os03g0250200 | - | Detail |
| C2H3g10452 | 3:6,993,303-6,994,169 | - | C1H3g02022 | - | LOC_Os03g14615 | Os03g0250301 | - | Detail |
| C2H3g28271 | 3:7,001,169-7,001,558 | - | C1H3g21317 | CX3g028936 | LOC_Os03g14630 | Os03g0250400 | - | Detail |
| C2H3g21148 | 3:7,023,734-7,027,554 | - | C1H3g06987 | - | LOC_Os10g40790 | - | - | Detail |
| C2H3g12224 | 3:7,043,570-7,044,310 | - | C1H3g21746 | CX3g025713 | LOC_Os03g14669 | Os03g0251350 | OsHAP5C, OsNF-YC2 | Detail |
| C2H3g01417 | 3:7,048,412-7,055,522 | + | C1H3g08441 | CX3g029617 | LOC_Os03g14690 | Os03g0251500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |