| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24166 | 3:10,368,569-10,374,959 | - | C2H3g16949 | CX3g027287 | LOC_Os03g20530 | Os03g0321500 | OsBBP1 | Detail |
| C1H3g22188 | 3:10,389,153-10,390,196 | + | C2H3g07472 | CX3g030570 | LOC_Os03g20550 | Os03g0321700 | OsWRKY31, OsWRKY55 | Detail |
| C1H3g31320 | 3:10,391,340-10,392,065 | - | C2H3g22893 | CX3g029278 | LOC_Os03g20560 | Os03g0321800 | - | Detail |
| C1H3g15973 | 3:10,392,341-10,393,283 | + | C2H3g22031 | CX3g025622 | LOC_Os03g20570 | Os03g0321900 | - | Detail |
| C1H3g10139 | 3:10,395,125-10,401,411 | - | C2H3g29406 | CX3g027052 | LOC_Os03g20580 | Os03g0322000 | - | Detail |
| C1H3g01616 | 3:10,401,796-10,402,290 | + | C2H3g13047 | CX3g026700 | LOC_Os03g20590 | - | - | Detail |
| C1H3g09864 | 3:10,402,723-10,403,079 | - | C2H3g25454 | CX3g029175 | LOC_Os03g20600 | Os03g0322200 | - | Detail |
| C1H3g20781 | 3:10,405,477-10,410,096 | + | C2H3g26982 | CX3g026757 | LOC_Os03g20630 | Os03g0322500 | - | Detail |
| C1H3g30541 | 3:10,410,658-10,412,920 | + | C2H3g00494 | CX3g029187 | LOC_Os03g20640 | Os03g0322600 | - | Detail |
| C1H3g17698 | 3:10,413,261-10,416,734 | - | C2H3g22567 | CX3g029676 | LOC_Os03g20650 | Os03g0322700 | - | Detail |
| C1H3g30170 | 3:10,426,497-10,430,175 | + | C2H3g08879 | CX3g029908 | LOC_Os03g20670 | Os03g0322800 | - | Detail |
| C1H3g03964 | 3:10,434,557-10,435,673 | - | C2H3g26182 | CX3g027559 | LOC_Os03g20680 | Os03g0322900 | LEA17, OsLEA17, OsLEA3-2, LEA3-2 | Detail |
| C1H3g25408 | 3:10,441,031-10,447,096 | + | - | - | - | - | - | Detail |
| C1H3g04844 | 3:10,450,166-10,455,634 | + | C2H3g04983 | CX3g028829 | LOC_Os03g20720 | Os03g0323500 | - | Detail |
| C1H3g01461 | 3:10,456,139-10,456,651 | - | C2H3g18862 | CX3g028214 | LOC_Os03g20730 | Os03g0323600 | - | Detail |
| C1H3g26967 | 3:10,465,665-10,471,153 | + | C2H3g17326 | CX3g025044 | LOC_Os03g20750 | Os03g0323800 | OsVDAC8 | Detail |
| C1H3g06354 | 3:10,475,868-10,477,209 | + | C2H3g13354 | CX3g030983 | LOC_Os03g20760 | Os03g0323900 | - | Detail |
| C1H3g25962 | 3:10,496,675-10,498,600 | + | C2H3g07692 | CX3g027267 | LOC_Os03g20790 | Os03g0324300 | - | Detail |
| C1H3g16108 | 3:10,509,294-10,512,515 | - | C2H3g01747 | CX3g029464 | LOC_Os03g20840 | Os03g0324600 | - | Detail |
| C1H3g01814 | 3:10,532,750-10,535,651 | + | C2H3g25599 | CX3g030289 | LOC_Os03g20850 | Os03g0324700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g02389 | 1:5,064,132-5,067,575 | + | C1H1g24281 | CX1g003100 | LOC_Os01g10790 | Os01g0205100 | - | Detail |
| C2H1g00620 | 1:5,072,968-5,076,457 | + | C1H1g05818 | - | - | - | - | Detail |
| C2H1g06707 | 1:5,077,033-5,077,365 | - | - | CX1g003988 | LOC_Os01g10760 | - | - | Detail |
| C2H1g06825 | 1:5,081,441-5,085,113 | + | C1H1g15430 | CX1g003100 | LOC_Os01g10790 | Os01g0205100 | - | Detail |
| C2H1g29778 | 1:5,085,647-5,088,895 | - | C1H1g01247 | CX1g002344 | LOC_Os01g10800 | Os01g0205200 | - | Detail |
| C2H1g24453 | 1:5,089,258-5,090,173 | + | C1H1g30346 | CX1g004381 | LOC_Os01g10810 | Os01g0205300 | - | Detail |
| C2H1g13509 | 1:5,090,729-5,093,048 | + | C1H1g10011 | CX1g000819 | LOC_Os01g10820 | Os01g0205500 | - | Detail |
| C2H1g12859 | 1:5,093,967-5,094,710 | + | - | CX1g000204 | LOC_Os01g10830 | Os01g0205600 | - | Detail |
| C2H1g23870 | 1:5,094,888-5,099,129 | - | C1H1g14161 | CX1g005006 | LOC_Os01g10840 | Os01g0205700 | OsGSK1 | Detail |
| C2H1g26064 | 1:5,109,784-5,111,337 | + | C1H1g29186 | CX1g004213 | LOC_Os01g10850 | Os01g0205900 | - | Detail |
| C2H1g07122 | 1:5,116,012-5,118,520 | - | C1H1g14349 | CX1g004112 | LOC_Os01g10860 | Os01g0206200 | - | Detail |
| C2H1g16332 | 1:5,120,411-5,121,958 | + | C1H1g03820 | CX1g005441 | LOC_Os01g10870 | Os01g0206300 | - | Detail |
| C2H1g26046 | 1:5,125,559-5,125,866 | + | C1H1g26102 | CX1g000067 | LOC_Os01g10880 | Os01g0206600 | - | Detail |
| C2H1g04173 | 1:5,127,327-5,128,712 | - | C1H1g18869 | CX1g006125 | LOC_Os01g10890 | Os01g0206700 | - | Detail |
| C2H1g21997 | 1:5,132,736-5,136,371 | - | C1H1g13675 | CX1g006766 | LOC_Os01g10900 | Os01g0206800 | - | Detail |
| C2H1g22901 | 1:5,136,207-5,136,641 | + | C1H1g27430 | - | - | Os01g0207001 | - | Detail |
| C2H1g18153 | 1:5,141,845-5,143,644 | - | C1H1g29711 | CX1g005481 | LOC_Os01g10920 | Os01g0207200 | - | Detail |
| C2H1g15053 | 1:5,144,297-5,146,141 | - | C1H1g26757 | CX1g005600 | LOC_Os01g10930 | Os01g0207200 | - | Detail |
| C2H1g24427 | 1:5,149,952-5,151,694 | - | C1H1g01947 | CX1g003080 | LOC_Os01g10950 | Os01g0207400 | - | Detail |
| C2H1g00526 | 1:5,153,817-5,155,649 | - | C1H1g01947 | CX1g002931 | LOC_Os01g10960 | Os01g0207600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |