| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24166 | 3:10,368,569-10,374,959 | - | C2H3g16949 | CX3g027287 | LOC_Os03g20530 | Os03g0321500 | OsBBP1 | Detail |
| C1H3g22188 | 3:10,389,153-10,390,196 | + | C2H3g07472 | CX3g030570 | LOC_Os03g20550 | Os03g0321700 | OsWRKY31, OsWRKY55 | Detail |
| C1H3g31320 | 3:10,391,340-10,392,065 | - | C2H3g22893 | CX3g029278 | LOC_Os03g20560 | Os03g0321800 | - | Detail |
| C1H3g15973 | 3:10,392,341-10,393,283 | + | C2H3g22031 | CX3g025622 | LOC_Os03g20570 | Os03g0321900 | - | Detail |
| C1H3g10139 | 3:10,395,125-10,401,411 | - | C2H3g29406 | CX3g027052 | LOC_Os03g20580 | Os03g0322000 | - | Detail |
| C1H3g01616 | 3:10,401,796-10,402,290 | + | C2H3g13047 | CX3g026700 | LOC_Os03g20590 | - | - | Detail |
| C1H3g09864 | 3:10,402,723-10,403,079 | - | C2H3g25454 | CX3g029175 | LOC_Os03g20600 | Os03g0322200 | - | Detail |
| C1H3g20781 | 3:10,405,477-10,410,096 | + | C2H3g26982 | CX3g026757 | LOC_Os03g20630 | Os03g0322500 | - | Detail |
| C1H3g30541 | 3:10,410,658-10,412,920 | + | C2H3g00494 | CX3g029187 | LOC_Os03g20640 | Os03g0322600 | - | Detail |
| C1H3g17698 | 3:10,413,261-10,416,734 | - | C2H3g22567 | CX3g029676 | LOC_Os03g20650 | Os03g0322700 | - | Detail |
| C1H3g30170 | 3:10,426,497-10,430,175 | + | C2H3g08879 | CX3g029908 | LOC_Os03g20670 | Os03g0322800 | - | Detail |
| C1H3g03964 | 3:10,434,557-10,435,673 | - | C2H3g26182 | CX3g027559 | LOC_Os03g20680 | Os03g0322900 | LEA17, OsLEA17, OsLEA3-2, LEA3-2 | Detail |
| C1H3g25408 | 3:10,441,031-10,447,096 | + | - | - | - | - | - | Detail |
| C1H3g04844 | 3:10,450,166-10,455,634 | + | C2H3g04983 | CX3g028829 | LOC_Os03g20720 | Os03g0323500 | - | Detail |
| C1H3g01461 | 3:10,456,139-10,456,651 | - | C2H3g18862 | CX3g028214 | LOC_Os03g20730 | Os03g0323600 | - | Detail |
| C1H3g26967 | 3:10,465,665-10,471,153 | + | C2H3g17326 | CX3g025044 | LOC_Os03g20750 | Os03g0323800 | OsVDAC8 | Detail |
| C1H3g06354 | 3:10,475,868-10,477,209 | + | C2H3g13354 | CX3g030983 | LOC_Os03g20760 | Os03g0323900 | - | Detail |
| C1H3g25962 | 3:10,496,675-10,498,600 | + | C2H3g07692 | CX3g027267 | LOC_Os03g20790 | Os03g0324300 | - | Detail |
| C1H3g16108 | 3:10,509,294-10,512,515 | - | C2H3g01747 | CX3g029464 | LOC_Os03g20840 | Os03g0324600 | - | Detail |
| C1H3g01814 | 3:10,532,750-10,535,651 | + | C2H3g25599 | CX3g030289 | LOC_Os03g20850 | Os03g0324700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g11754 | 1:31,664,071-31,668,463 | + | C1H1g15578 | CX1g001115 | LOC_Os01g61830 | Os01g0834700 | - | Detail |
| C2H1g04024 | 1:31,671,750-31,672,915 | - | C1H1g28438 | CX1g005583 | LOC_Os01g61840 | Os01g0834800 | - | Detail |
| C2H1g07677 | 1:31,680,907-31,690,138 | - | C1H1g29053 | CX1g004964 | LOC_Os01g61860 | Os01g0835000 | - | Detail |
| C2H1g02343 | 1:31,705,293-31,709,691 | + | C1H1g14368 | CX1g001158 | LOC_Os01g61880 | Os01g0835500 | - | Detail |
| C2H1g27745 | 1:31,720,413-31,721,614 | - | C1H1g23056 | CX1g000977 | LOC_Os01g61900 | Os01g0835700 | OsCCT01 | Detail |
| C2H1g21602 | 1:31,725,912-31,729,228 | - | C1H1g04133 | CX1g007240 | LOC_Os01g61910 | Os01g0835800 | - | Detail |
| C2H1g23810 | 1:31,737,549-31,737,794 | + | - | - | - | - | - | Detail |
| C2H1g29300 | 1:31,738,786-31,748,396 | + | C1H1g12123 | CX1g000993 | LOC_Os01g61930 | - | - | Detail |
| C2H1g15144 | 1:31,763,529-31,764,278 | - | C1H1g04982 | - | LOC_Os01g61950 | - | - | Detail |
| C2H1g29885 | 1:31,765,649-31,766,863 | - | C1H1g15863 | CX1g001966 | LOC_Os01g61960 | Os01g0836700 | - | Detail |
| C2H1g06537 | 1:31,783,539-31,786,652 | - | C1H1g22081 | CX1g004745 | LOC_Os01g61990 | Os01g0837000 | - | Detail |
| C2H1g25983 | 1:31,788,385-31,789,795 | + | C1H1g08351 | CX1g000248 | LOC_Os01g62000 | Os01g0837100 | OsPLL2 | Detail |
| C2H1g10234 | 1:31,789,909-31,792,207 | + | C1H1g29335 | CX1g003679 | LOC_Os01g62010 | Os01g0837200 | - | Detail |
| C2H1g23741 | 1:31,793,893-31,797,615 | + | C1H1g10810 | CX1g003883 | LOC_Os01g62020 | Os01g0837300 | OsUXS4 | Detail |
| C2H1g07218 | 1:31,799,152-31,804,468 | + | C1H1g12894 | CX1g001070 | LOC_Os01g62040 | Os01g0837500 | - | Detail |
| C2H1g26587 | 1:31,808,511-31,809,296 | + | C1H1g00961 | CX1g002011 | LOC_Os01g62060 | Os01g0837600 | DGP1 | Detail |
| C2H1g28819 | 1:31,818,681-31,823,341 | - | C1H1g29125 | CX1g002419 | LOC_Os01g62070 | Os01g0837800 | - | Detail |
| C2H1g16663 | 1:31,827,220-31,830,953 | - | C1H1g06942 | CX1g006172 | LOC_Os01g62080 | Os01g0837900 | - | Detail |
| C2H1g02384 | 1:31,851,338-31,854,908 | + | C1H1g29226 | CX1g002865 | LOC_Os05g38610 | Os01g0838800 | - | Detail |
| C2H1g20151 | 1:31,855,352-31,858,418 | - | C1H1g17733 | CX1g005211 | LOC_Os01g62160 | Os01g0838900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |