| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16001 | 3:10,173,735-10,175,036 | + | C2H3g05954 | CX3g026260 | LOC_Os03g20230 | Os03g0318400 | - | Detail |
| C1H3g07890 | 3:10,192,334-10,193,545 | + | C2H3g08312 | CX3g025491 | LOC_Os03g20230 | Os03g0317900 | - | Detail |
| C1H3g20479 | 3:10,200,586-10,201,880 | + | C2H3g29183 | CX3g028957 | LOC_Os03g20290 | Os03g0318400 | - | Detail |
| C1H3g31254 | 3:10,203,377-10,209,318 | - | C2H3g10315 | CX3g024974 | LOC_Os03g20300 | Os03g0318500 | - | Detail |
| C1H3g27797 | 3:10,209,753-10,214,845 | - | C2H3g15586 | CX3g025701 | LOC_Os03g20310 | Os03g0318600 | OsTGA3 | Detail |
| C1H3g25597 | 3:10,233,111-10,233,644 | + | C2H3g06773 | CX3g031095 | LOC_Os03g20330 | Os03g0319000 | - | Detail |
| C1H3g29099 | 3:10,242,233-10,246,996 | + | C2H3g23539 | CX3g030494 | LOC_Os03g20340 | Os03g0319100 | - | Detail |
| C1H3g19829 | 3:10,254,192-10,255,623 | + | C2H3g28901 | CX3g028434 | LOC_Os03g20350 | Os03g0319200 | - | Detail |
| C1H3g23043 | 3:10,259,154-10,260,436 | + | C2H3g27412 | CX3g031077 | LOC_Os03g20370 | Os03g0319300 | OsCam1-1, OsCaM1-1, OsCaM1 | Detail |
| C1H3g21490 | 3:10,262,867-10,268,355 | - | C2H3g25279 | CX3g026317 | LOC_Os03g20380 | Os03g0319400 | - | Detail |
| C1H3g25971 | 3:10,281,082-10,284,619 | - | C2H3g09371 | CX3g025212 | LOC_Os03g20410 | Os03g0320000 | OsSIP2 | Detail |
| C1H3g08252 | 3:10,290,492-10,298,627 | - | C2H3g22340 | CX3g029293 | LOC_Os03g20420 | Os03g0320100 | - | Detail |
| C1H3g09342 | 3:10,303,100-10,304,444 | + | C2H3g01972 | CX3g029244 | LOC_Os03g20430 | Os03g0320400 | - | Detail |
| C1H3g07396 | 3:10,310,058-10,310,714 | - | C2H3g13875 | CX3g027813 | LOC_Os03g20440 | Os03g0320600 | - | Detail |
| C1H3g21035 | 3:10,326,442-10,331,578 | + | C2H3g23140 | CX3g030303 | LOC_Os03g20450 | Os03g0320800 | - | Detail |
| C1H3g22135 | 3:10,334,633-10,337,401 | + | C2H3g14660 | CX3g027683 | LOC_Os03g20460 | Os03g0320900 | V2, pt/mtGK | Detail |
| C1H3g27273 | 3:10,338,765-10,341,238 | + | C2H3g12919 | CX3g026494 | LOC_Os03g20470 | Os03g0321000 | - | Detail |
| C1H3g19861 | 3:10,351,468-10,352,613 | + | C2H3g01230 | CX3g029583 | LOC_Os03g20500 | Os03g0321300 | - | Detail |
| C1H3g31579 | 3:10,352,696-10,352,992 | - | C2H3g17781 | - | - | - | - | Detail |
| C1H3g05314 | 3:10,360,363-10,366,269 | - | C2H3g10177 | CX3g030418 | LOC_Os03g20520 | Os03g0321400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05995 | 3:23,353,840-23,360,112 | + | C1H3g08255 | CX3g025417 | LOC_Os03g44760 | Os03g0650400 | OsAM1 | Detail |
| C2H3g04123 | 3:23,365,568-23,368,654 | + | C1H3g04288 | CX3g029305 | LOC_Os03g44780 | Os03g0650700 | - | Detail |
| C2H3g25934 | 3:23,376,058-23,379,647 | + | C1H3g26002 | CX3g030102 | LOC_Os03g44800 | Os03g0650800 | - | Detail |
| C2H3g09215 | 3:23,380,760-23,383,326 | - | C1H3g15894 | CX3g025882 | LOC_Os03g44810 | Os03g0650900 | OsNLA2 | Detail |
| C2H3g18405 | 3:23,389,822-23,395,637 | + | C1H3g26796 | CX3g030028 | LOC_Os03g44820 | Os03g0651000 | - | Detail |
| C2H3g28118 | 3:23,392,076-23,399,652 | - | C1H3g28349 | CX3g026647 | LOC_Os03g44830 | Os03g0651100 | - | Detail |
| C2H3g18007 | 3:23,412,866-23,416,601 | - | C1H3g24505 | CX3g025530 | LOC_Os03g44840 | Os03g0651300 | - | Detail |
| C2H3g06423 | 3:23,419,178-23,419,672 | + | C1H3g26171 | - | - | - | - | Detail |
| C2H3g02024 | 3:23,425,394-23,426,265 | + | C1H3g24453 | CX3g026588 | LOC_Os03g44860 | - | - | Detail |
| C2H3g28657 | 3:23,436,378-23,436,686 | + | C1H3g26409 | CX3g025130 | LOC_Os03g44880 | Os03g0651800 | - | Detail |
| C2H3g03221 | 3:23,454,058-23,464,939 | + | C1H3g29368 | CX3g027235 | LOC_Os03g44900 | Os03g0652100 | - | Detail |
| C2H3g22550 | 3:23,466,563-23,467,393 | - | C1H3g01838 | CX3g031191 | - | - | - | Detail |
| C2H3g28037 | 3:23,481,141-23,481,464 | - | C1H3g10492 | CX3g027235 | LOC_Os03g44900 | Os03g0652600 | - | Detail |
| C2H3g20973 | 3:23,481,653-23,484,565 | - | C1H3g17818 | CX3g030705 | LOC_Os03g44950 | - | - | Detail |
| C2H3g17941 | 3:23,514,588-23,520,530 | - | C1H3g02859 | CX3g027629 | LOC_Os03g45120 | Os03g0653900 | - | Detail |
| C2H3g06696 | 3:23,550,319-23,556,097 | - | C1H3g07189 | CX3g027165 | LOC_Os03g45170 | Os03g0654400 | - | Detail |
| C2H3g22615 | 3:23,558,639-23,563,286 | - | C1H3g30470 | CX3g029174 | LOC_Os03g45180 | Os03g0654500 | - | Detail |
| C2H3g20364 | 3:23,564,019-23,565,466 | - | C1H3g08581 | CX3g031252 | LOC_Os03g45194 | Os03g0325500 | - | Detail |
| C2H3g01388 | 3:23,566,588-23,571,569 | - | C1H3g11388 | CX3g030732 | LOC_Os03g45194 | Os03g0654600 | NOL | Detail |
| C2H3g23313 | 3:23,573,325-23,581,245 | - | C1H3g03137 | CX3g025719 | LOC_Os09g01375 | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |