| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17775 | 3:9,985,565-9,988,366 | + | C2H3g16430 | CX3g029208 | LOC_Os03g19890 | Os03g0313000 | - | Detail |
| C1H3g19322 | 3:9,989,368-9,991,648 | - | C2H3g25727 | CX3g025344 | LOC_Os03g19900 | Os03g0313100 | - | Detail |
| C1H3g29669 | 3:10,006,598-10,011,641 | - | C2H3g16070 | CX3g026685 | LOC_Os03g19920 | Os03g0313300 | - | Detail |
| C1H3g10646 | 3:10,016,203-10,020,175 | + | C2H3g06268 | CX3g029276 | LOC_Os03g19930 | Os03g0313600 | - | Detail |
| C1H3g19201 | 3:10,024,367-10,024,669 | - | C2H3g30521 | CX3g031341 | LOC_Os03g19940 | Os03g0313800 | - | Detail |
| C1H3g16128 | 3:10,029,580-10,033,322 | + | C2H3g00659 | CX3g028576 | LOC_Os03g19960 | Os03g0314100 | - | Detail |
| C1H3g20812 | 3:10,033,752-10,039,054 | - | C2H3g06742 | CX3g025949 | LOC_Os03g19970 | Os03g0314200 | - | Detail |
| C1H3g05706 | 3:10,043,621-10,045,567 | + | C2H3g04215 | CX3g028739 | LOC_Os03g19980 | Os03g0314400 | - | Detail |
| C1H3g20485 | 3:10,056,382-10,059,467 | + | C2H3g25214 | CX3g029467 | LOC_Os03g19990 | Os03g0314500 | - | Detail |
| C1H3g18195 | 3:10,063,933-10,065,186 | + | C2H3g21031 | CX3g027957 | LOC_Os03g20010 | Os03g0314700 | - | Detail |
| C1H3g02376 | 3:10,068,167-10,068,949 | + | C2H3g01699 | CX3g027957 | - | - | - | Detail |
| C1H3g19914 | 3:10,076,610-10,081,150 | - | C2H3g06553 | CX3g027685 | LOC_Os03g20020 | Os03g0314800 | OsNIN1 | Detail |
| C1H3g29631 | 3:10,083,744-10,085,888 | + | C2H3g07740 | CX3g026874 | - | - | - | Detail |
| C1H3g14664 | 3:10,098,846-10,100,962 | - | C2H3g15105 | CX3g029724 | LOC_Os03g20090 | Os03g0315400 | OsMYB2 | Detail |
| C1H3g20197 | 3:10,123,966-10,128,304 | - | C2H3g14730 | CX3g031333 | LOC_Os03g20100 | Os03g0315800 | ASL4 | Detail |
| C1H3g21365 | 3:10,139,964-10,141,649 | + | C2H3g02965 | CX3g026763 | LOC_Os03g20120 | Os03g0316200 | OsGolS1 | Detail |
| C1H3g25401 | 3:10,152,434-10,155,086 | + | C2H3g20528 | CX3g027966 | LOC_Os03g20170 | Os03g0316900 | OsABCI16 | Detail |
| C1H3g25351 | 3:10,157,674-10,163,122 | + | C2H3g18428 | CX3g028132 | LOC_Os03g20180 | Os03g0317000 | - | Detail |
| C1H3g17147 | 3:10,164,495-10,167,626 | + | C2H3g29051 | CX3g030095 | LOC_Os03g20190 | Os03g0317100 | - | Detail |
| C1H3g11404 | 3:10,171,760-10,173,106 | + | C2H3g17176 | CX3g028796 | LOC_Os03g20210 | Os03g0317300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g05175 | 12:18,612,120-18,614,699 | - | C1H12g27529 | CX12g016909 | LOC_Os12g36640 | Os12g0552500 | - | Detail |
| C2H12g12611 | 12:18,643,871-18,645,485 | + | C1H12g15786 | CX12g015364 | LOC_Os12g36660 | Os12g0552600 | TGW12a, qTGW12a | Detail |
| C2H12g17412 | 12:18,651,995-18,655,567 | + | C1H12g29275 | - | - | - | - | Detail |
| C2H12g05930 | 12:18,655,623-18,659,418 | + | C1H12g29275 | CX12g016435 | LOC_Os12g36670 | Os12g0552700 | - | Detail |
| C2H12g03052 | 12:18,663,825-18,666,317 | + | C1H12g24562 | CX12g015172 | LOC_Os12g36680 | Os12g0552800 | - | Detail |
| C2H12g02154 | 12:18,669,185-18,672,797 | - | C1H12g15410 | CX12g018213 | LOC_Os12g36690 | Os12g0516300 | - | Detail |
| C2H12g06633 | 12:18,675,354-18,675,587 | + | C1H12g01930 | CX12g016931 | - | - | - | Detail |
| C2H12g27584 | 12:18,684,117-18,686,666 | + | C1H12g05813 | - | LOC_Os12g36740 | Os12g0516700 | - | Detail |
| C2H12g15252 | 12:18,688,119-18,691,324 | - | C1H12g29363 | CX12g016031 | LOC_Os12g36750 | Os12g0516800 | - | Detail |
| C2H12g14585 | 12:18,696,663-18,706,850 | - | C1H12g01446 | CX12g016097 | LOC_Os12g36760 | Os12g0554400 | - | Detail |
| C2H12g15590 | 12:18,708,188-18,712,821 | - | C1H12g23720 | CX12g016599 | LOC_Os12g36770 | Os12g0554500 | - | Detail |
| C2H12g04076 | 12:18,735,632-18,739,412 | + | C1H12g01737 | CX12g018046 | LOC_Os12g36810 | Os12g0554800 | - | Detail |
| C2H12g06219 | 12:18,744,095-18,744,872 | + | C1H12g12652 | - | LOC_Os12g36830 | Os12g0555000 | RSOsPR10 | Detail |
| C2H12g04688 | 12:18,748,457-18,749,381 | + | C1H12g26248 | - | LOC_Os12g36840 | Os12g0555100 | - | Detail |
| C2H12g04650 | 12:18,755,015-18,756,454 | + | C1H12g09962 | - | LOC_Os12g36850 | Os12g0555200 | RPR10b | Detail |
| C2H12g30203 | 12:18,760,122-18,761,122 | + | C1H12g15174 | - | LOC_Os12g36860 | Os12g0555300 | RPR10c | Detail |
| C2H12g14119 | 12:18,763,230-18,764,525 | + | C1H12g06069 | - | LOC_Os12g36880 | Os12g0555500 | OsPR10a, PBZ1 | Detail |
| C2H12g14752 | 12:18,767,562-18,772,083 | - | C1H12g31071 | CX12g016121 | LOC_Os12g36890 | Os12g0555600 | ND1, CSLD4, OsCSLD4, OsCD1, CD1, SPO1 | Detail |
| C2H12g19509 | 12:18,780,869-18,785,650 | + | C1H12g15134 | CX12g015599 | LOC_Os12g36900 | Os12g0556100 | - | Detail |
| C2H12g19756 | 12:18,792,886-18,797,069 | + | C1H12g31407 | CX12g016424 | LOC_Os12g36910 | Os12g0556200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |