| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01414 | 3:9,778,251-9,779,987 | + | C2H3g07392 | CX3g025445 | LOC_Os03g19550 | Os03g0308700 | - | Detail |
| C1H3g19377 | 3:9,780,635-9,785,522 | - | C2H3g00056 | CX3g030908 | LOC_Os03g19560 | Os03g0308800 | - | Detail |
| C1H3g11990 | 3:9,786,471-9,794,665 | - | C2H3g29613 | CX3g028131 | LOC_Os03g19570 | Os03g0308900 | - | Detail |
| C1H3g12362 | 3:9,795,576-9,800,128 | - | C2H3g04332 | CX3g027111 | LOC_Os03g19580 | Os03g0309000 | - | Detail |
| C1H3g01579 | 3:9,808,254-9,816,184 | + | C2H3g27208 | CX3g027710 | LOC_Os03g19590 | Os03g0309200 | PHYB, phyB | Detail |
| C1H3g31344 | 3:9,824,951-9,826,372 | + | C2H3g30389 | - | - | - | - | Detail |
| C1H3g14051 | 3:9,827,578-9,829,181 | - | C2H3g16987 | CX3g026554 | LOC_Os03g19610 | Os03g0309400 | OsPME1 | Detail |
| C1H3g18443 | 3:9,861,806-9,862,148 | + | C2H3g26228 | CX3g028408 | LOC_Os03g19640 | Os03g0252100 | DIP12, OsDIP12 | Detail |
| C1H3g11555 | 3:9,866,082-9,866,303 | + | C2H3g16697 | CX3g028766 | - | - | - | Detail |
| C1H3g03110 | 3:9,867,246-9,867,458 | - | C2H3g13080 | - | - | - | - | Detail |
| C1H3g27332 | 3:9,868,185-9,872,075 | + | C2H3g12766 | CX3g028595 | LOC_Os03g19650 | Os03g0309800 | - | Detail |
| C1H3g10972 | 3:9,879,396-9,881,349 | + | C2H3g11631 | CX3g030795 | LOC_Os03g19670 | Os03g0310000 | - | Detail |
| C1H3g01286 | 3:9,884,372-9,886,152 | + | C2H3g08022 | CX3g026374 | LOC_Os03g19680 | Os03g0310400 | - | Detail |
| C1H3g04682 | 3:9,887,382-9,896,455 | + | C2H3g15288 | CX3g030825 | LOC_Os03g19690 | Os03g0310500 | - | Detail |
| C1H3g07093 | 3:9,897,195-9,898,457 | - | C2H3g22353 | CX3g025321 | LOC_Os03g19700 | Os03g0310600 | - | Detail |
| C1H3g20690 | 3:9,907,599-9,908,120 | + | C2H3g16003 | CX3g025589 | LOC_Os03g19720 | Os03g0310800 | - | Detail |
| C1H3g23036 | 3:9,915,304-9,931,072 | + | C2H3g12709 | CX3g026836 | LOC_Os03g19760 | Os03g0311300 | - | Detail |
| C1H3g30348 | 3:9,942,024-9,942,641 | + | C2H3g30555 | CX3g030611 | LOC_Os03g19780 | Os03g0311600 | - | Detail |
| C1H3g27309 | 3:9,970,410-9,981,734 | + | C2H3g20097 | CX3g025645 | LOC_Os03g19870 | Os03g0312600 | - | Detail |
| C1H3g28649 | 3:9,973,260-9,975,417 | - | C2H3g03722 | CX3g026953 | LOC_Os03g19840 | Os03g0312300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g30640 | 4:1,719,255-1,723,962 | + | C1H4g17799 | CX4g036248 | LOC_Os04g04330 | Os04g0132500 | CTB4a, OsRLCK127, RLCK127 | Detail |
| C2H4g19144 | 4:1,739,532-1,740,113 | - | C1H4g19447 | CX4g034832 | - | - | - | Detail |
| C2H4g05610 | 4:1,764,995-1,767,457 | + | C1H4g23533 | CX4g032097 | LOC_Os04g04750 | Os04g0134800 | - | Detail |
| C2H4g00703 | 4:1,777,022-1,779,592 | - | C1H4g07028 | CX4g035198 | LOC_Os04g04670 | Os04g0125700 | - | Detail |
| C2H4g09916 | 4:1,791,202-1,791,932 | - | C1H4g07028 | CX4g032348 | LOC_Os04g04770 | Os04g0125700 | - | Detail |
| C2H4g15842 | 4:1,841,229-1,843,356 | + | C1H4g07028 | CX4g032198 | LOC_Os04g04670 | Os04g0125700 | - | Detail |
| C2H4g06784 | 4:1,926,268-1,927,874 | + | C1H4g07028 | CX4g034389 | LOC_Os04g04670 | Os04g0136000 | - | Detail |
| C2H4g27188 | 4:1,989,202-1,989,675 | - | - | CX4g032153 | - | - | - | Detail |
| C2H4g18525 | 4:2,014,982-2,015,732 | - | - | CX4g034918 | - | - | - | Detail |
| C2H4g26240 | 4:2,023,261-2,024,654 | - | C1H4g07028 | CX4g032163 | LOC_Os04g05470 | Os04g0125700 | - | Detail |
| C2H4g08696 | 4:2,025,532-2,026,003 | - | C1H4g07028 | CX4g032163 | LOC_Os04g05470 | Os04g0140666 | - | Detail |
| C2H4g14822 | 4:2,053,699-2,054,665 | - | C1H4g07028 | CX4g032348 | LOC_Os04g04770 | Os04g0125700 | - | Detail |
| C2H4g13248 | 4:2,075,582-2,078,396 | - | C1H4g07691 | CX4g036479 | LOC_Os04g05010 | Os04g0136700 | - | Detail |
| C2H4g08946 | 4:2,087,740-2,089,679 | + | C1H4g00435 | CX4g033792 | LOC_Os04g05030 | Os04g0136900 | - | Detail |
| C2H4g24029 | 4:2,119,317-2,124,783 | + | C1H4g17319 | CX4g036173 | LOC_Os04g05050 | Os04g0137201 | OsPLL4.2 | Detail |
| C2H4g03790 | 4:2,139,695-2,140,441 | - | C1H4g22056 | CX4g032910 | LOC_Os04g05070 | Os04g0137450 | - | Detail |
| C2H4g29226 | 4:2,148,952-2,152,002 | + | C1H4g09732 | CX4g033283 | LOC_Os04g05080 | Os04g0137500 | - | Detail |
| C2H4g11106 | 4:2,167,536-2,167,985 | - | - | - | - | - | - | Detail |
| C2H4g03441 | 4:2,178,143-2,186,459 | - | C1H4g13170 | CX4g035554 | LOC_Os04g05470 | Os04g0140400 | - | Detail |
| C2H4g16775 | 4:2,186,503-2,187,141 | - | C1H4g07028 | CX4g035554 | LOC_Os04g05470 | Os04g0140666 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |