| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g22410 | 3:9,653,640-9,670,836 | - | C2H3g27650 | CX3g028723 | LOC_Os03g19340 | Os03g0306302 | - | Detail |
| C1H3g02755 | 3:9,673,057-9,684,839 | - | C2H3g07435 | CX3g027549 | LOC_Os03g19350 | Os03g0306400 | - | Detail |
| C1H3g18574 | 3:9,693,186-9,693,707 | + | C2H3g20582 | CX3g026074 | LOC_Os03g19370 | Os03g0239400 | - | Detail |
| C1H3g08148 | 3:9,697,027-9,697,413 | + | C2H3g07871 | CX3g027392 | LOC_Os03g19380 | Os03g0306800 | - | Detail |
| C1H3g23949 | 3:9,698,066-9,699,944 | - | C2H3g26352 | CX3g025960 | LOC_Os03g19390 | Os03g0306900 | - | Detail |
| C1H3g18672 | 3:9,700,354-9,702,247 | + | C2H3g08753 | CX3g025770 | LOC_Os03g19400 | Os03g0307000 | - | Detail |
| C1H3g26919 | 3:9,704,213-9,712,441 | + | C2H3g28158 | CX3g025641 | LOC_Os03g19410 | Os03g0307100 | - | Detail |
| C1H3g07326 | 3:9,713,219-9,714,250 | + | C2H3g27859 | CX3g028955 | LOC_Os03g19427 | Os03g0307300 | - | Detail |
| C1H3g08713 | 3:9,718,529-9,721,420 | - | C2H3g23633 | CX3g027893 | LOC_Os03g19420 | Os03g0307200 | NAS2, OsNAS2 | Detail |
| C1H3g12875 | 3:9,726,075-9,726,569 | + | C2H3g12347 | CX3g027748 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g10945 | 3:9,728,815-9,730,023 | + | C2H3g00214 | CX3g025182 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g01117 | 3:9,730,438-9,733,711 | + | C2H3g27228 | CX3g028724 | LOC_Os03g19462 | - | - | Detail |
| C1H3g07984 | 3:9,736,446-9,738,788 | + | C2H3g27622 | CX3g026010 | LOC_Os03g19470 | Os03g0307700 | - | Detail |
| C1H3g00240 | 3:9,739,183-9,746,390 | - | C2H3g03655 | CX3g031316 | LOC_Os03g19480 | Os03g0307800 | IEZ1, OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718 | Detail |
| C1H3g04726 | 3:9,747,960-9,748,489 | + | C2H3g06844 | CX3g025615 | LOC_Os03g13830 | Os03g0307900 | - | Detail |
| C1H3g19730 | 3:9,749,541-9,752,191 | + | C2H3g23976 | CX3g024948 | LOC_Os03g19500 | Os03g0308000 | SMG3 | Detail |
| C1H3g14154 | 3:9,753,787-9,756,227 | - | C2H3g08220 | CX3g029346 | LOC_Os03g19510 | Os03g0308100 | - | Detail |
| C1H3g03825 | 3:9,757,509-9,765,821 | - | C2H3g05621 | CX3g025603 | LOC_Os03g19520 | Os03g0308200 | - | Detail |
| C1H3g14624 | 3:9,768,562-9,772,665 | + | C2H3g16168 | CX3g029899 | LOC_Os03g19530 | Os03g0308500 | - | Detail |
| C1H3g25260 | 3:9,776,622-9,777,400 | + | C2H3g22628 | CX3g025445 | LOC_Os03g19540 | Os03g0308600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05806 | 3:15,764,718-15,767,058 | - | C1H3g26776 | CX3g030533 | LOC_Os03g30430 | Os03g0417800 | - | Detail |
| C2H3g00213 | 3:15,792,961-15,804,822 | - | C1H3g22117 | CX3g028562 | LOC_Os03g30460 | Os03g0417900 | - | Detail |
| C2H3g11020 | 3:15,840,522-15,845,220 | + | C1H3g24326 | CX3g030496 | LOC_Os03g30530 | Os03g0418700 | - | Detail |
| C2H3g12370 | 3:15,857,667-15,861,953 | + | C1H3g09665 | CX3g029078 | LOC_Os03g30550 | Os03g0418800 | - | Detail |
| C2H3g18691 | 3:15,868,465-15,871,838 | + | C1H3g06989 | CX3g028098 | LOC_Os03g30570 | Os03g0419100 | - | Detail |
| C2H3g24235 | 3:15,913,776-15,914,588 | + | C1H3g12867 | CX3g025925 | LOC_Os03g30620 | Os03g0419700 | - | Detail |
| C2H3g01931 | 3:15,925,298-15,929,842 | - | C1H3g04444 | CX3g030573 | LOC_Os03g30740 | Os03g0421000 | - | Detail |
| C2H3g23509 | 3:15,951,524-15,955,336 | - | C1H3g15668 | CX3g027425 | LOC_Os03g31026 | - | - | Detail |
| C2H3g27833 | 3:15,956,932-15,959,562 | - | C1H3g16102 | CX3g030856 | LOC_Os12g43000 | - | - | Detail |
| C2H3g16480 | 3:15,999,598-16,006,027 | - | C1H3g12239 | CX3g031361 | LOC_Os03g30790 | Os03g0421400 | - | Detail |
| C2H3g11452 | 3:16,008,376-16,008,696 | + | C1H3g04388 | CX3g026632 | LOC_Os03g30800 | Os03g0421700 | - | Detail |
| C2H3g19512 | 3:16,011,364-16,011,842 | + | C1H3g01834 | CX3g026632 | - | Os03g0829000 | - | Detail |
| C2H3g13281 | 3:16,015,895-16,017,732 | - | C1H3g24665 | CX3g030283 | LOC_Os03g30830 | Os03g0421800 | - | Detail |
| C2H3g11381 | 3:16,047,288-16,047,746 | + | - | CX3g031037 | - | Os03g0422702 | - | Detail |
| C2H3g30654 | 3:16,053,317-16,059,776 | + | C1H3g25671 | CX3g029866 | LOC_Os03g30890 | Os03g0422800 | SDRLP-8 | Detail |
| C2H3g09391 | 3:16,068,539-16,074,589 | - | C1H3g21142 | CX3g027808 | LOC_Os03g30934 | Os03g0423200 | - | Detail |
| C2H3g11099 | 3:16,089,381-16,090,703 | - | C1H3g28137 | CX3g030134 | LOC_Os03g30950 | Os03g0423300 | - | Detail |
| C2H3g06341 | 3:16,117,265-16,124,558 | + | C1H3g02815 | CX3g030906 | LOC_Os03g31000 | Os03g0424000 | - | Detail |
| C2H3g24636 | 3:16,126,299-16,130,855 | + | C1H3g12825 | CX3g027986 | LOC_Os03g31010 | Os03g0423800 | - | Detail |
| C2H3g14126 | 3:16,133,479-16,134,967 | + | C1H3g15507 | CX9g057750 | LOC_Os03g31090 | Os03g0424500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |