| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g22410 | 3:9,653,640-9,670,836 | - | C2H3g27650 | CX3g028723 | LOC_Os03g19340 | Os03g0306302 | - | Detail |
| C1H3g02755 | 3:9,673,057-9,684,839 | - | C2H3g07435 | CX3g027549 | LOC_Os03g19350 | Os03g0306400 | - | Detail |
| C1H3g18574 | 3:9,693,186-9,693,707 | + | C2H3g20582 | CX3g026074 | LOC_Os03g19370 | Os03g0239400 | - | Detail |
| C1H3g08148 | 3:9,697,027-9,697,413 | + | C2H3g07871 | CX3g027392 | LOC_Os03g19380 | Os03g0306800 | - | Detail |
| C1H3g23949 | 3:9,698,066-9,699,944 | - | C2H3g26352 | CX3g025960 | LOC_Os03g19390 | Os03g0306900 | - | Detail |
| C1H3g18672 | 3:9,700,354-9,702,247 | + | C2H3g08753 | CX3g025770 | LOC_Os03g19400 | Os03g0307000 | - | Detail |
| C1H3g26919 | 3:9,704,213-9,712,441 | + | C2H3g28158 | CX3g025641 | LOC_Os03g19410 | Os03g0307100 | - | Detail |
| C1H3g07326 | 3:9,713,219-9,714,250 | + | C2H3g27859 | CX3g028955 | LOC_Os03g19427 | Os03g0307300 | - | Detail |
| C1H3g08713 | 3:9,718,529-9,721,420 | - | C2H3g23633 | CX3g027893 | LOC_Os03g19420 | Os03g0307200 | NAS2, OsNAS2 | Detail |
| C1H3g12875 | 3:9,726,075-9,726,569 | + | C2H3g12347 | CX3g027748 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g10945 | 3:9,728,815-9,730,023 | + | C2H3g00214 | CX3g025182 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g01117 | 3:9,730,438-9,733,711 | + | C2H3g27228 | CX3g028724 | LOC_Os03g19462 | - | - | Detail |
| C1H3g07984 | 3:9,736,446-9,738,788 | + | C2H3g27622 | CX3g026010 | LOC_Os03g19470 | Os03g0307700 | - | Detail |
| C1H3g00240 | 3:9,739,183-9,746,390 | - | C2H3g03655 | CX3g031316 | LOC_Os03g19480 | Os03g0307800 | IEZ1, OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718 | Detail |
| C1H3g04726 | 3:9,747,960-9,748,489 | + | C2H3g06844 | CX3g025615 | LOC_Os03g13830 | Os03g0307900 | - | Detail |
| C1H3g19730 | 3:9,749,541-9,752,191 | + | C2H3g23976 | CX3g024948 | LOC_Os03g19500 | Os03g0308000 | SMG3 | Detail |
| C1H3g14154 | 3:9,753,787-9,756,227 | - | C2H3g08220 | CX3g029346 | LOC_Os03g19510 | Os03g0308100 | - | Detail |
| C1H3g03825 | 3:9,757,509-9,765,821 | - | C2H3g05621 | CX3g025603 | LOC_Os03g19520 | Os03g0308200 | - | Detail |
| C1H3g14624 | 3:9,768,562-9,772,665 | + | C2H3g16168 | CX3g029899 | LOC_Os03g19530 | Os03g0308500 | - | Detail |
| C1H3g25260 | 3:9,776,622-9,777,400 | + | C2H3g22628 | CX3g025445 | LOC_Os03g19540 | Os03g0308600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02200 | 3:2,609,300-2,610,406 | - | C1H3g20866 | CX3g030887 | LOC_Os03g06010 | Os03g0155500 | - | Detail |
| C2H3g03476 | 3:2,612,393-2,613,388 | - | C1H3g11002 | CX3g030887 | LOC_Os03g06020 | Os03g0155700 | - | Detail |
| C2H3g21765 | 3:2,619,415-2,620,446 | + | C1H3g29148 | CX3g026879 | LOC_Os03g06040 | Os03g0155900 | - | Detail |
| C2H3g20541 | 3:2,624,633-2,625,595 | + | C1H3g13236 | CX3g030616 | LOC_Os03g06050 | Os03g0156000 | - | Detail |
| C2H3g21016 | 3:2,629,249-2,630,594 | + | C1H3g14896 | CX3g030362 | LOC_Os03g06050 | Os03g0156000 | - | Detail |
| C2H3g26202 | 3:2,633,485-2,639,149 | + | C1H3g22589 | CX3g028170 | LOC_Os03g06070 | Os03g0156500 | - | Detail |
| C2H3g20735 | 3:2,640,563-2,641,197 | - | C1H3g15562 | CX3g027145 | LOC_Os03g06080 | Os03g0156600 | OsHIPP41 | Detail |
| C2H3g12120 | 3:2,642,180-2,644,917 | - | C1H3g17245 | CX3g030214 | LOC_Os03g06090 | Os03g0156700 | OsZNL | Detail |
| C2H3g29999 | 3:2,646,295-2,649,058 | - | - | - | - | Os03g0157000 | - | Detail |
| C2H3g09177 | 3:2,652,062-2,657,264 | + | C1H3g00011 | CX3g027334 | LOC_Os03g06120 | Os03g0157300 | - | Detail |
| C2H3g13704 | 3:2,657,674-2,663,468 | - | C1H3g18475 | CX3g029328 | LOC_Os03g06139 | Os03g0157400 | - | Detail |
| C2H3g27336 | 3:2,669,139-2,672,974 | + | C1H3g26244 | CX3g029562 | LOC_Os03g06160 | Os03g0157500 | - | Detail |
| C2H3g20862 | 3:2,673,337-2,674,229 | - | C1H3g25701 | CX3g026857 | LOC_Os03g06170 | Os03g0157600 | - | Detail |
| C2H3g00855 | 3:2,675,701-2,678,664 | + | C1H3g29213 | CX3g027580 | LOC_Os03g06180 | Os03g0157700 | - | Detail |
| C2H3g07970 | 3:2,679,454-2,679,916 | + | C1H3g13607 | CX3g027580 | LOC_Os03g06180 | Os03g0157700 | - | Detail |
| C2H3g02320 | 3:2,681,833-2,687,892 | + | C1H3g27937 | CX3g029139 | LOC_Os03g06190 | Os03g0157800 | - | Detail |
| C2H3g08121 | 3:2,688,883-2,690,157 | + | C1H3g17311 | CX3g030066 | LOC_Os03g06200 | Os03g0157900 | - | Detail |
| C2H3g26855 | 3:2,692,206-2,696,613 | + | C1H3g14244 | CX3g027012 | LOC_Os03g06220 | Os03g0158200 | - | Detail |
| C2H3g29839 | 3:2,696,713-2,698,887 | - | C1H3g30148 | CX3g025660 | LOC_Os03g06230 | Os03g0158300 | - | Detail |
| C2H3g19059 | 3:2,700,568-2,704,828 | - | C1H3g19490 | CX3g029728 | LOC_Os03g06240 | Os03g0158500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |