| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g22410 | 3:9,653,640-9,670,836 | - | C2H3g27650 | CX3g028723 | LOC_Os03g19340 | Os03g0306302 | - | Detail |
| C1H3g02755 | 3:9,673,057-9,684,839 | - | C2H3g07435 | CX3g027549 | LOC_Os03g19350 | Os03g0306400 | - | Detail |
| C1H3g18574 | 3:9,693,186-9,693,707 | + | C2H3g20582 | CX3g026074 | LOC_Os03g19370 | Os03g0239400 | - | Detail |
| C1H3g08148 | 3:9,697,027-9,697,413 | + | C2H3g07871 | CX3g027392 | LOC_Os03g19380 | Os03g0306800 | - | Detail |
| C1H3g23949 | 3:9,698,066-9,699,944 | - | C2H3g26352 | CX3g025960 | LOC_Os03g19390 | Os03g0306900 | - | Detail |
| C1H3g18672 | 3:9,700,354-9,702,247 | + | C2H3g08753 | CX3g025770 | LOC_Os03g19400 | Os03g0307000 | - | Detail |
| C1H3g26919 | 3:9,704,213-9,712,441 | + | C2H3g28158 | CX3g025641 | LOC_Os03g19410 | Os03g0307100 | - | Detail |
| C1H3g07326 | 3:9,713,219-9,714,250 | + | C2H3g27859 | CX3g028955 | LOC_Os03g19427 | Os03g0307300 | - | Detail |
| C1H3g08713 | 3:9,718,529-9,721,420 | - | C2H3g23633 | CX3g027893 | LOC_Os03g19420 | Os03g0307200 | NAS2, OsNAS2 | Detail |
| C1H3g12875 | 3:9,726,075-9,726,569 | + | C2H3g12347 | CX3g027748 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g10945 | 3:9,728,815-9,730,023 | + | C2H3g00214 | CX3g025182 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g01117 | 3:9,730,438-9,733,711 | + | C2H3g27228 | CX3g028724 | LOC_Os03g19462 | - | - | Detail |
| C1H3g07984 | 3:9,736,446-9,738,788 | + | C2H3g27622 | CX3g026010 | LOC_Os03g19470 | Os03g0307700 | - | Detail |
| C1H3g00240 | 3:9,739,183-9,746,390 | - | C2H3g03655 | CX3g031316 | LOC_Os03g19480 | Os03g0307800 | IEZ1, OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718 | Detail |
| C1H3g04726 | 3:9,747,960-9,748,489 | + | C2H3g06844 | CX3g025615 | LOC_Os03g13830 | Os03g0307900 | - | Detail |
| C1H3g19730 | 3:9,749,541-9,752,191 | + | C2H3g23976 | CX3g024948 | LOC_Os03g19500 | Os03g0308000 | SMG3 | Detail |
| C1H3g14154 | 3:9,753,787-9,756,227 | - | C2H3g08220 | CX3g029346 | LOC_Os03g19510 | Os03g0308100 | - | Detail |
| C1H3g03825 | 3:9,757,509-9,765,821 | - | C2H3g05621 | CX3g025603 | LOC_Os03g19520 | Os03g0308200 | - | Detail |
| C1H3g14624 | 3:9,768,562-9,772,665 | + | C2H3g16168 | CX3g029899 | LOC_Os03g19530 | Os03g0308500 | - | Detail |
| C1H3g25260 | 3:9,776,622-9,777,400 | + | C2H3g22628 | CX3g025445 | LOC_Os03g19540 | Os03g0308600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g07976 | 2:15,851,812-15,854,514 | + | C1H2g27611 | CX2g019651 | LOC_Os02g27490 | Os02g0475400 | - | Detail |
| C2H2g06652 | 2:15,935,377-15,940,694 | - | C1H2g06193 | CX2g021099 | LOC_Os02g27680 | Os02g0478300 | - | Detail |
| C2H2g20700 | 2:15,940,693-15,941,101 | + | - | - | LOC_Os09g02390 | - | - | Detail |
| C2H2g03372 | 2:15,980,799-15,987,675 | + | C1H2g16285 | CX2g019568 | LOC_Os02g27620 | Os02g0477700 | D50 | Detail |
| C2H2g29133 | 2:16,008,194-16,013,621 | + | C1H2g05787 | CX2g019048 | LOC_Os02g27740 | Os02g0478500 | - | Detail |
| C2H2g00622 | 2:16,027,559-16,028,170 | + | C1H2g31453 | CX2g021026 | LOC_Os02g27760 | Os02g0478600 | - | Detail |
| C2H2g29643 | 2:16,030,878-16,032,157 | + | C1H2g23077 | CX2g021434 | LOC_Os02g27769 | Os02g0478700 | - | Detail |
| C2H2g08132 | 2:16,055,813-16,058,109 | - | C1H2g27566 | CX2g023314 | LOC_Os02g27810 | Os02g0479300 | - | Detail |
| C2H2g20571 | 2:16,066,583-16,070,902 | + | C1H2g08374 | CX2g023237 | LOC_Os02g27820 | Os02g0480800 | - | Detail |
| C2H2g14883 | 2:16,077,146-16,081,037 | + | C1H2g02192 | CX2g023237 | LOC_Os02g27940 | Os02g0480800 | - | Detail |
| C2H2g01090 | 2:16,083,346-16,091,909 | - | C1H2g03099 | CX2g018838 | LOC_Os02g27950 | Os02g0480900 | - | Detail |
| C2H2g16284 | 2:16,096,850-16,098,907 | - | C1H2g20113 | CX2g024690 | LOC_Os02g27960 | Os02g0481000 | - | Detail |
| C2H2g02051 | 2:16,140,667-16,149,655 | - | C1H2g19483 | CX2g024232 | LOC_Os02g28040 | Os02g0481700 | - | Detail |
| C2H2g01590 | 2:16,154,782-16,164,693 | + | C1H2g16509 | CX2g023813 | LOC_Os02g28074 | Os02g0481900 | OsXrn4-L | Detail |
| C2H2g18669 | 2:16,189,961-16,190,922 | - | C1H2g25526 | CX2g024525 | LOC_Os02g28170 | Os02g0483500 | - | Detail |
| C2H2g29077 | 2:16,221,489-16,222,941 | - | C1H2g01888 | CX2g024525 | LOC_Os02g28170 | Os02g0483500 | - | Detail |
| C2H2g02782 | 2:16,228,444-16,229,398 | - | - | - | - | - | - | Detail |
| C2H2g14927 | 2:16,237,864-16,239,251 | - | C1H2g26062 | CX2g024525 | LOC_Os02g28200 | Os02g0483800 | - | Detail |
| C2H2g12358 | 2:16,293,526-16,297,061 | + | C1H2g17511 | CX2g024017 | LOC_Os02g28340 | Os02g0485000 | - | Detail |
| C2H2g02644 | 2:16,367,824-16,368,837 | + | C1H2g22601 | CX2g020796 | LOC_Os02g28450 | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |