| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g22410 | 3:9,653,640-9,670,836 | - | C2H3g27650 | CX3g028723 | LOC_Os03g19340 | Os03g0306302 | - | Detail |
| C1H3g02755 | 3:9,673,057-9,684,839 | - | C2H3g07435 | CX3g027549 | LOC_Os03g19350 | Os03g0306400 | - | Detail |
| C1H3g18574 | 3:9,693,186-9,693,707 | + | C2H3g20582 | CX3g026074 | LOC_Os03g19370 | Os03g0239400 | - | Detail |
| C1H3g08148 | 3:9,697,027-9,697,413 | + | C2H3g07871 | CX3g027392 | LOC_Os03g19380 | Os03g0306800 | - | Detail |
| C1H3g23949 | 3:9,698,066-9,699,944 | - | C2H3g26352 | CX3g025960 | LOC_Os03g19390 | Os03g0306900 | - | Detail |
| C1H3g18672 | 3:9,700,354-9,702,247 | + | C2H3g08753 | CX3g025770 | LOC_Os03g19400 | Os03g0307000 | - | Detail |
| C1H3g26919 | 3:9,704,213-9,712,441 | + | C2H3g28158 | CX3g025641 | LOC_Os03g19410 | Os03g0307100 | - | Detail |
| C1H3g07326 | 3:9,713,219-9,714,250 | + | C2H3g27859 | CX3g028955 | LOC_Os03g19427 | Os03g0307300 | - | Detail |
| C1H3g08713 | 3:9,718,529-9,721,420 | - | C2H3g23633 | CX3g027893 | LOC_Os03g19420 | Os03g0307200 | NAS2, OsNAS2 | Detail |
| C1H3g12875 | 3:9,726,075-9,726,569 | + | C2H3g12347 | CX3g027748 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g10945 | 3:9,728,815-9,730,023 | + | C2H3g00214 | CX3g025182 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g01117 | 3:9,730,438-9,733,711 | + | C2H3g27228 | CX3g028724 | LOC_Os03g19462 | - | - | Detail |
| C1H3g07984 | 3:9,736,446-9,738,788 | + | C2H3g27622 | CX3g026010 | LOC_Os03g19470 | Os03g0307700 | - | Detail |
| C1H3g00240 | 3:9,739,183-9,746,390 | - | C2H3g03655 | CX3g031316 | LOC_Os03g19480 | Os03g0307800 | IEZ1, OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718 | Detail |
| C1H3g04726 | 3:9,747,960-9,748,489 | + | C2H3g06844 | CX3g025615 | LOC_Os03g13830 | Os03g0307900 | - | Detail |
| C1H3g19730 | 3:9,749,541-9,752,191 | + | C2H3g23976 | CX3g024948 | LOC_Os03g19500 | Os03g0308000 | SMG3 | Detail |
| C1H3g14154 | 3:9,753,787-9,756,227 | - | C2H3g08220 | CX3g029346 | LOC_Os03g19510 | Os03g0308100 | - | Detail |
| C1H3g03825 | 3:9,757,509-9,765,821 | - | C2H3g05621 | CX3g025603 | LOC_Os03g19520 | Os03g0308200 | - | Detail |
| C1H3g14624 | 3:9,768,562-9,772,665 | + | C2H3g16168 | CX3g029899 | LOC_Os03g19530 | Os03g0308500 | - | Detail |
| C1H3g25260 | 3:9,776,622-9,777,400 | + | C2H3g22628 | CX3g025445 | LOC_Os03g19540 | Os03g0308600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g23172 | 1:26,139,335-26,143,274 | - | C1H1g08444 | CX1g007119 | LOC_Os01g51040 | Os01g0706700 | - | Detail |
| C2H1g02936 | 1:26,144,356-26,145,544 | - | C1H1g22596 | CX1g002628 | LOC_Os01g51050 | Os01g0706800 | - | Detail |
| C2H1g02706 | 1:26,148,767-26,154,889 | - | C1H1g15814 | CX1g001598 | LOC_Os01g51060 | Os01g0706900 | OsAH9 | Detail |
| C2H1g05617 | 1:26,164,238-26,167,099 | + | C1H1g28612 | CX1g002795 | LOC_Os01g51120 | Os01g0707300 | - | Detail |
| C2H1g03133 | 1:26,175,383-26,178,058 | - | C1H1g30984 | - | - | - | - | Detail |
| C2H1g10394 | 1:26,199,178-26,204,544 | + | C1H1g10432 | CX1g000030 | LOC_Os01g51154 | Os01g0708000 | OsTRBF3 | Detail |
| C2H1g22584 | 1:26,207,188-26,207,723 | - | C1H1g24014 | - | - | - | - | Detail |
| C2H1g18203 | 1:26,209,214-26,213,011 | + | C1H1g02406 | CX1g003591 | LOC_Os01g51190 | Os01g0708300 | - | Detail |
| C2H1g14381 | 1:26,217,280-26,222,211 | + | C1H1g30931 | CX1g000162 | LOC_Os01g51200 | Os01g0570500 | - | Detail |
| C2H1g25316 | 1:26,223,399-26,225,462 | - | C1H1g26666 | CX1g006316 | LOC_Os01g51210 | Os01g0708500 | - | Detail |
| C2H1g12880 | 1:26,227,599-26,232,539 | + | C1H1g09706 | CX1g002967 | LOC_Os01g51220 | Os01g0708600 | - | Detail |
| C2H1g01487 | 1:26,233,376-26,235,484 | - | C1H1g20984 | CX1g004777 | LOC_Os01g51230 | Os01g0708700 | - | Detail |
| C2H1g13173 | 1:26,241,159-26,245,353 | + | C1H1g24856 | CX1g006124 | LOC_Os01g51250 | Os01g0708900 | - | Detail |
| C2H1g26791 | 1:26,251,187-26,252,718 | + | C1H1g05640 | CX1g004079 | LOC_Os01g51260 | Os01g0709000 | Os2R_MYB13 | Detail |
| C2H1g16264 | 1:26,259,315-26,262,284 | + | C1H1g15780 | CX1g006026 | LOC_Os01g51280 | Os01g0709400 | - | Detail |
| C2H1g08623 | 1:26,263,061-26,272,241 | - | C1H1g31428 | CX1g007054 | LOC_Os01g51290 | Os01g0709500 | - | Detail |
| C2H1g14661 | 1:26,281,485-26,287,173 | + | C1H1g30106 | CX1g001712 | LOC_Os01g51300 | Os01g0710000 | OsFVE, OsRBAP1, BGSD-2 | Detail |
| C2H1g15591 | 1:26,302,236-26,303,283 | - | C1H1g02532 | CX1g003098 | LOC_Os01g51330 | Os01g0710300 | - | Detail |
| C2H1g11214 | 1:26,310,323-26,313,300 | - | C1H1g29431 | CX1g000647 | LOC_Os01g51360 | Os01g0710700 | - | Detail |
| C2H1g10466 | 1:26,314,586-26,320,247 | + | C1H1g22136 | CX1g002177 | LOC_Os01g51380 | Os01g0711000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |