| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g25691 | 3:9,462,289-9,465,500 | + | C2H3g16033 | CX3g029358 | LOC_Os03g19020 | Os03g0302200 | OsHIRP1 | Detail |
| C1H3g01186 | 3:9,471,237-9,472,085 | + | C2H3g22160 | CX3g025355 | LOC_Os03g19040 | Os03g0302500 | - | Detail |
| C1H3g04602 | 3:9,474,864-9,477,250 | + | C2H3g04749 | CX3g031208 | LOC_Os03g19059 | Os03g0302700 | - | Detail |
| C1H3g22154 | 3:9,479,142-9,479,789 | + | C2H3g01569 | CX3g027498 | LOC_Os03g19070 | Os03g0302800 | - | Detail |
| C1H3g20481 | 3:9,493,622-9,498,114 | + | C2H3g02069 | CX3g029770 | LOC_Os03g19080 | Os03g0302900 | SSD1 | Detail |
| C1H3g20097 | 3:9,501,969-9,503,042 | + | C2H3g07365 | CX3g030525 | LOC_Os03g19090 | Os03g0303100 | - | Detail |
| C1H3g25874 | 3:9,511,342-9,517,834 | - | C2H3g09593 | CX3g027281 | LOC_Os03g19120 | Os03g0303500 | OsP1 | Detail |
| C1H3g30781 | 3:9,538,145-9,538,965 | - | C2H3g00606 | CX3g028949 | LOC_Os03g19170 | Os03g0304100 | - | Detail |
| C1H3g08647 | 3:9,542,012-9,549,190 | + | C2H3g12534 | CX3g027589 | LOC_Os03g19190 | Os03g0304400 | - | Detail |
| C1H3g21470 | 3:9,562,466-9,565,948 | - | C2H3g09070 | CX3g026232 | LOC_Os03g19200 | Os03g0304500 | - | Detail |
| C1H3g06043 | 3:9,588,138-9,590,992 | - | C2H3g20134 | - | LOC_Os03g19220 | Os03g0304800 | - | Detail |
| C1H3g10550 | 3:9,600,828-9,604,939 | - | C2H3g11777 | CX3g026365 | LOC_Os03g19240 | Os03g0305000 | - | Detail |
| C1H3g05747 | 3:9,607,422-9,611,029 | - | C2H3g17079 | CX3g028640 | LOC_Os03g19250 | Os03g0305100 | - | Detail |
| C1H3g00125 | 3:9,615,615-9,616,253 | - | C2H3g13465 | CX3g029782 | LOC_Os03g19260 | Os03g0305200 | - | Detail |
| C1H3g18796 | 3:9,624,177-9,625,049 | - | C2H3g28502 | CX3g028201 | LOC_Os03g19270 | Os03g0305400 | OsUSP3 | Detail |
| C1H3g22639 | 3:9,627,619-9,632,059 | + | C2H3g12913 | CX3g030535 | LOC_Os03g19280 | Os03g0305500 | ASL1, OsASL1.2, OsASL1, OsAL1, red1 | Detail |
| C1H3g06291 | 3:9,633,050-9,634,190 | + | C2H3g24123 | CX3g026844 | LOC_Os03g19290 | Os03g0305600 | - | Detail |
| C1H3g09918 | 3:9,635,133-9,638,331 | + | C2H3g29234 | CX3g029447 | LOC_Os03g19300 | Os03g0305700 | - | Detail |
| C1H3g15276 | 3:9,638,602-9,640,053 | - | C2H3g25404 | CX3g025751 | LOC_Os03g19310 | Os03g0305800 | - | Detail |
| C1H3g04998 | 3:9,651,450-9,652,799 | + | C2H3g04492 | CX3g029664 | LOC_Os03g19330 | Os03g0306100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g14566 | 4:22,201,342-22,206,414 | - | C1H4g08841 | - | LOC_Os04g43390 | Os04g0513400 | - | Detail |
| C2H4g30554 | 4:22,209,518-22,210,146 | - | C1H4g08841 | - | LOC_Os04g43390 | Os04g0513100 | Os4BGlu14 | Detail |
| C2H4g20018 | 4:22,211,192-22,215,105 | - | C1H4g03090 | - | LOC_Os04g43400 | Os04g0513700 | - | Detail |
| C2H4g12844 | 4:22,218,087-22,218,538 | - | C1H4g03090 | - | LOC_Os04g43390 | Os04g0513400 | - | Detail |
| C2H4g08699 | 4:22,222,906-22,228,245 | - | C1H4g31804 | - | LOC_Os04g43410 | Os04g0513900 | Os4BGlu18 | Detail |
| C2H4g24186 | 4:22,231,235-22,231,564 | - | - | CX4g036275 | - | - | - | Detail |
| C2H4g06239 | 4:22,232,499-22,234,673 | + | C1H4g08265 | CX4g035316 | LOC_Os04g43420 | Os04g0514400 | - | Detail |
| C2H4g28560 | 4:22,240,027-22,244,109 | - | C1H4g00643 | CX4g032578 | LOC_Os04g43440 | Os04g0514600 | - | Detail |
| C2H4g20498 | 4:22,247,523-22,251,788 | - | C1H4g05501 | CX4g035553 | LOC_Os04g43490 | Os04g0514800 | - | Detail |
| C2H4g19370 | 4:22,262,457-22,264,590 | - | C1H4g03273 | CX4g034547 | LOC_Os02g40880 | Os04g0515300 | - | Detail |
| C2H4g03762 | 4:22,265,036-22,267,945 | + | C1H4g25523 | CX4g032382 | LOC_Os04g43550 | Os04g0515400 | - | Detail |
| C2H4g00895 | 4:22,270,393-22,273,653 | - | C1H3g23204 | CX4g032860 | LOC_Os03g08700 | Os03g0185500 | - | Detail |
| C2H4g24134 | 4:22,287,464-22,289,780 | + | C1H4g27910 | CX4g031507 | LOC_Os04g43560 | Os04g0515900 | - | Detail |
| C2H4g12828 | 4:22,298,058-22,298,660 | - | C1H4g12776 | - | LOC_Os04g43580 | Os04g0516200 | OsG1L4 | Detail |
| C2H4g21844 | 4:22,319,376-22,321,936 | - | C1H4g23819 | CX4g034816 | LOC_Os04g43650 | Os04g0516600 | - | Detail |
| C2H4g17407 | 4:22,331,332-22,332,855 | + | C1H4g30570 | CX4g035460 | LOC_Os04g43660 | Os04g0516900 | - | Detail |
| C2H4g08355 | 4:22,333,627-22,335,358 | + | C1H4g13624 | CX4g032257 | LOC_Os04g43670 | Os04g0517000 | - | Detail |
| C2H4g12515 | 4:22,340,857-22,342,676 | - | C1H4g07527 | CX4g033299 | LOC_Os04g43680 | Os04g0517100 | OsMyb4, MYB55 | Detail |
| C2H4g00297 | 4:22,353,494-22,358,296 | - | C1H4g10053 | CX4g034783 | LOC_Os04g43690 | Os04g0517300 | - | Detail |
| C2H4g03267 | 4:22,358,361-22,363,870 | + | C1H4g19364 | CX4g034365 | LOC_Os04g43700 | Os04g0517400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |