| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g25691 | 3:9,462,289-9,465,500 | + | C2H3g16033 | CX3g029358 | LOC_Os03g19020 | Os03g0302200 | OsHIRP1 | Detail |
| C1H3g01186 | 3:9,471,237-9,472,085 | + | C2H3g22160 | CX3g025355 | LOC_Os03g19040 | Os03g0302500 | - | Detail |
| C1H3g04602 | 3:9,474,864-9,477,250 | + | C2H3g04749 | CX3g031208 | LOC_Os03g19059 | Os03g0302700 | - | Detail |
| C1H3g22154 | 3:9,479,142-9,479,789 | + | C2H3g01569 | CX3g027498 | LOC_Os03g19070 | Os03g0302800 | - | Detail |
| C1H3g20481 | 3:9,493,622-9,498,114 | + | C2H3g02069 | CX3g029770 | LOC_Os03g19080 | Os03g0302900 | SSD1 | Detail |
| C1H3g20097 | 3:9,501,969-9,503,042 | + | C2H3g07365 | CX3g030525 | LOC_Os03g19090 | Os03g0303100 | - | Detail |
| C1H3g25874 | 3:9,511,342-9,517,834 | - | C2H3g09593 | CX3g027281 | LOC_Os03g19120 | Os03g0303500 | OsP1 | Detail |
| C1H3g30781 | 3:9,538,145-9,538,965 | - | C2H3g00606 | CX3g028949 | LOC_Os03g19170 | Os03g0304100 | - | Detail |
| C1H3g08647 | 3:9,542,012-9,549,190 | + | C2H3g12534 | CX3g027589 | LOC_Os03g19190 | Os03g0304400 | - | Detail |
| C1H3g21470 | 3:9,562,466-9,565,948 | - | C2H3g09070 | CX3g026232 | LOC_Os03g19200 | Os03g0304500 | - | Detail |
| C1H3g06043 | 3:9,588,138-9,590,992 | - | C2H3g20134 | - | LOC_Os03g19220 | Os03g0304800 | - | Detail |
| C1H3g10550 | 3:9,600,828-9,604,939 | - | C2H3g11777 | CX3g026365 | LOC_Os03g19240 | Os03g0305000 | - | Detail |
| C1H3g05747 | 3:9,607,422-9,611,029 | - | C2H3g17079 | CX3g028640 | LOC_Os03g19250 | Os03g0305100 | - | Detail |
| C1H3g00125 | 3:9,615,615-9,616,253 | - | C2H3g13465 | CX3g029782 | LOC_Os03g19260 | Os03g0305200 | - | Detail |
| C1H3g18796 | 3:9,624,177-9,625,049 | - | C2H3g28502 | CX3g028201 | LOC_Os03g19270 | Os03g0305400 | OsUSP3 | Detail |
| C1H3g22639 | 3:9,627,619-9,632,059 | + | C2H3g12913 | CX3g030535 | LOC_Os03g19280 | Os03g0305500 | ASL1, OsASL1.2, OsASL1, OsAL1, red1 | Detail |
| C1H3g06291 | 3:9,633,050-9,634,190 | + | C2H3g24123 | CX3g026844 | LOC_Os03g19290 | Os03g0305600 | - | Detail |
| C1H3g09918 | 3:9,635,133-9,638,331 | + | C2H3g29234 | CX3g029447 | LOC_Os03g19300 | Os03g0305700 | - | Detail |
| C1H3g15276 | 3:9,638,602-9,640,053 | - | C2H3g25404 | CX3g025751 | LOC_Os03g19310 | Os03g0305800 | - | Detail |
| C1H3g04998 | 3:9,651,450-9,652,799 | + | C2H3g04492 | CX3g029664 | LOC_Os03g19330 | Os03g0306100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05108 | 3:4,707,270-4,710,116 | + | C1H3g14289 | CX3g026129 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| C2H3g04674 | 3:4,711,100-4,713,323 | - | C1H3g07517 | CX3g029780 | LOC_Os03g10450 | Os03g0201600 | - | Detail |
| C2H3g27684 | 3:4,714,151-4,716,867 | + | C1H3g08866 | CX3g025008 | LOC_Os03g10460 | Os03g0201700 | - | Detail |
| C2H3g15317 | 3:4,716,730-4,720,061 | - | C1H3g26823 | CX3g027908 | LOC_Os03g10469 | Os03g0201800 | - | Detail |
| C2H3g07444 | 3:4,720,624-4,725,054 | - | C1H3g22443 | CX3g027908 | LOC_Os03g10478 | Os03g0201901 | - | Detail |
| C2H3g09161 | 3:4,730,604-4,734,181 | - | C1H3g14443 | CX3g028036 | LOC_Os03g10500 | Os03g0202001 | - | Detail |
| C2H3g24025 | 3:4,736,414-4,740,022 | - | C1H3g22113 | CX3g026152 | LOC_Os03g10510 | Os03g0202200 | OsVDAC5 | Detail |
| C2H3g13194 | 3:4,741,051-4,745,017 | - | C1H3g27837 | CX3g030169 | LOC_Os03g10520 | Os03g0202300 | - | Detail |
| C2H3g17561 | 3:4,746,437-4,749,472 | - | C1H3g27666 | CX3g025689 | LOC_Os03g10590 | Os03g0203000 | - | Detail |
| C2H3g21513 | 3:4,752,859-4,759,444 | + | C1H3g27625 | CX3g029844 | LOC_Os03g10600 | Os03g0203100 | - | Detail |
| C2H3g08169 | 3:4,771,694-4,772,873 | + | C1H3g03653 | CX3g027943 | LOC_Os03g10620 | Os03g0203200 | D14, D88, D88/D14, qPPB3, HTD4 | Detail |
| C2H3g27974 | 3:4,783,031-4,789,961 | + | C1H3g22146 | CX3g027605 | LOC_Os03g10640 | Os03g0203700 | - | Detail |
| C2H3g08201 | 3:4,792,026-4,793,503 | - | C1H3g29891 | CX3g028482 | LOC_Os03g10650 | Os03g0203800 | - | Detail |
| C2H3g30001 | 3:4,812,950-4,817,305 | + | C1H3g06442 | CX3g026677 | LOC_Os03g10680 | Os03g0204100 | - | Detail |
| C2H3g23547 | 3:4,820,796-4,821,985 | + | C1H3g30369 | CX3g029117 | LOC_Os03g10730 | - | - | Detail |
| C2H3g15767 | 3:4,829,271-4,829,690 | - | C1H3g08546 | - | LOC_Os03g10710 | Os03g0204500 | - | Detail |
| C2H3g08384 | 3:4,832,991-4,834,679 | + | C1H3g00980 | CX3g029117 | LOC_Os03g10730 | - | - | Detail |
| C2H3g07827 | 3:4,838,784-4,841,678 | + | C1H3g16112 | CX3g030767 | LOC_Os03g10730 | Os03g0157000 | - | Detail |
| C2H3g15453 | 3:4,842,534-4,842,952 | - | C1H3g05329 | - | LOC_Os03g10740 | Os03g0204900 | - | Detail |
| C2H3g17885 | 3:4,844,672-4,850,468 | - | C1H3g13244 | CX3g028803 | LOC_Os03g10750 | Os03g0205000 | SPL35 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |