| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20574 | 3:9,329,178-9,330,089 | - | C2H3g09178 | CX3g025577 | LOC_Os03g18770 | Os03g0299600 | - | Detail |
| C1H3g08338 | 3:9,337,998-9,342,845 | - | C2H3g30408 | CX3g025927 | LOC_Os03g18790 | Os03g0299800 | - | Detail |
| C1H3g29390 | 3:9,349,800-9,353,092 | + | C2H3g01680 | CX3g025303 | LOC_Os03g18810 | Os03g0299900 | - | Detail |
| C1H3g08396 | 3:9,354,500-9,355,846 | - | C2H3g29698 | CX3g025517 | LOC_Os03g18820 | Os03g0300000 | - | Detail |
| C1H3g18508 | 3:9,358,745-9,363,101 | - | C2H3g28163 | CX3g030992 | LOC_Os03g18830 | Os03g0300200 | - | Detail |
| C1H3g23407 | 3:9,363,130-9,368,923 | + | C2H3g21841 | CX3g030790 | LOC_Os03g18840 | Os03g0300300 | - | Detail |
| C1H3g17735 | 3:9,369,635-9,370,688 | + | C2H3g29151 | CX3g027983 | LOC_Os03g18850 | Os03g0300400 | JIOsPR10 | Detail |
| C1H3g06825 | 3:9,372,739-9,374,436 | - | C2H3g16892 | CX3g030884 | LOC_Os03g18860 | Os03g0300500 | - | Detail |
| C1H3g14250 | 3:9,378,512-9,379,460 | - | C2H3g14772 | CX3g030255 | LOC_Os03g18870 | Os03g0300600 | - | Detail |
| C1H3g00200 | 3:9,382,697-9,383,802 | - | C2H3g30255 | CX3g030501 | LOC_Os03g18880 | Os03g0300700 | - | Detail |
| C1H3g08826 | 3:9,389,647-9,390,753 | + | C2H3g17031 | CX3g028981 | LOC_Os03g18890 | Os03g0300900 | - | Detail |
| C1H3g12713 | 3:9,403,361-9,405,376 | + | C2H3g21070 | CX3g030388 | LOC_Os03g18910 | Os03g0301200 | - | Detail |
| C1H3g28323 | 3:9,411,285-9,417,311 | + | C2H3g13460 | CX3g027587 | LOC_Os03g18940 | Os03g0301400 | - | Detail |
| C1H3g10793 | 3:9,419,559-9,421,572 | + | C2H3g01957 | CX3g029287 | LOC_Os03g18950 | Os03g0301500 | - | Detail |
| C1H3g07825 | 3:9,423,765-9,426,852 | + | C2H3g01576 | CX3g028454 | LOC_Os03g18960 | Os03g0301600 | - | Detail |
| C1H3g28727 | 3:9,427,701-9,431,383 | - | C2H3g21248 | CX3g025125 | LOC_Os03g18970 | Os03g0301700 | - | Detail |
| C1H3g15707 | 3:9,436,895-9,442,990 | - | C2H3g22040 | CX3g025499 | LOC_Os03g18980 | Os03g0301800 | - | Detail |
| C1H3g00497 | 3:9,452,767-9,453,381 | + | C2H3g24219 | CX3g025566 | LOC_Os03g18990 | Os03g0301900 | - | Detail |
| C1H3g25455 | 3:9,456,188-9,456,952 | + | C2H3g19658 | - | LOC_Os03g19000 | Os03g0301950 | PEX11-2, OsPEX11-2, OsPEX11-5 | Detail |
| C1H3g00671 | 3:9,458,395-9,460,800 | + | C2H3g01269 | - | LOC_Os03g19010 | Os03g0302000 | PEX11-3, OsPEX11-3, OsPEX11 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g04555 | 4:14,527,353-14,528,913 | + | C1H4g01732 | CX4g031772 | LOC_Os04g28990 | Os04g0359100 | - | Detail |
| C2H4g18096 | 4:14,552,693-14,554,676 | + | C1H4g14057 | CX4g031772 | LOC_Os04g29030 | Os04g0359700 | - | Detail |
| C2H4g27829 | 4:14,582,673-14,587,234 | - | C1H4g23432 | CX4g032592 | LOC_Os04g29090 | Os04g0360500 | - | Detail |
| C2H4g25764 | 4:14,587,984-14,592,804 | - | - | - | - | - | - | Detail |
| C2H4g15795 | 4:14,742,433-14,744,253 | - | C1H4g21615 | CX4g034254 | - | Os04g0363700 | - | Detail |
| C2H4g03810 | 4:14,786,346-14,786,891 | + | C1H4g10002 | CX4g036086 | LOC_Os04g29950 | Os04g0365100 | - | Detail |
| C2H4g08882 | 4:14,790,894-14,794,307 | + | C1H4g11644 | CX4g036086 | LOC_Os04g30010 | Os04g0365100 | - | Detail |
| C2H4g05483 | 4:14,856,558-14,857,105 | - | C1H4g11644 | CX4g036156 | LOC_Os04g30240 | Os04g0366000 | - | Detail |
| C2H4g06191 | 4:15,052,311-15,057,064 | - | C1H4g01491 | CX4g035129 | LOC_Os04g30360 | Os04g0367201 | - | Detail |
| C2H4g19842 | 4:15,072,893-15,074,080 | + | C1H4g05945 | CX4g036217 | LOC_Os04g29920 | Os04g0367400 | - | Detail |
| C2H4g09256 | 4:15,080,080-15,081,117 | - | C1H4g22817 | CX4g035931 | LOC_Os04g30160 | Os04g0368000 | - | Detail |
| C2H4g30553 | 4:15,082,529-15,083,452 | - | C1H4g22817 | CX4g035931 | LOC_Os04g30360 | Os04g0367900 | - | Detail |
| C2H4g09401 | 4:15,098,392-15,101,020 | - | C1H4g03650 | CX4g035309 | LOC_Os04g30160 | Os04g0368000 | - | Detail |
| C2H4g11929 | 4:15,128,397-15,130,189 | - | C1H4g03650 | CX4g035309 | LOC_Os04g30160 | Os04g0368300 | - | Detail |
| C2H4g06332 | 4:15,130,904-15,131,815 | - | C1H4g01982 | CX4g035309 | LOC_Os04g30160 | Os04g0368300 | - | Detail |
| C2H4g00907 | 4:15,146,542-15,149,640 | - | C1H4g03650 | CX4g035309 | LOC_Os04g30240 | Os04g0368800 | - | Detail |
| C2H4g18237 | 4:15,198,650-15,201,834 | - | C1H4g22817 | CX4g035931 | LOC_Os04g30370 | Os04g0367900 | - | Detail |
| C2H4g22616 | 4:15,219,276-15,222,438 | + | C1H4g03650 | CX4g033563 | LOC_Os04g30360 | Os04g0372100 | - | Detail |
| C2H4g06280 | 4:15,229,416-15,229,526 | + | - | - | - | - | - | Detail |
| C2H4g02498 | 4:15,265,477-15,269,685 | + | C1H4g15913 | CX4g031772 | LOC_Os04g30420 | Os04g0372700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |