| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g03995 | 3:9,193,090-9,196,256 | + | C2H3g04518 | CX3g027883 | LOC_Os03g18510 | Os03g0296400 | - | Detail |
| C1H3g15230 | 3:9,196,980-9,199,648 | + | C2H3g25990 | CX3g027567 | LOC_Os03g18520 | Os03g0296500 | - | Detail |
| C1H3g03574 | 3:9,200,402-9,200,851 | + | C2H3g19945 | CX3g030647 | LOC_Os03g18530 | Os03g0296600 | FEB1 | Detail |
| C1H3g02938 | 3:9,201,770-9,205,717 | + | C2H3g00640 | CX3g027501 | LOC_Os03g18540 | Os03g0296700 | - | Detail |
| C1H3g26064 | 3:9,208,464-9,211,509 | + | C2H3g07011 | CX3g028835 | LOC_Os03g18550 | Os03g0296800 | - | Detail |
| C1H3g30555 | 3:9,213,604-9,215,153 | - | C2H3g30506 | CX3g028050 | LOC_Os03g18560 | Os03g0297000 | - | Detail |
| C1H3g12769 | 3:9,215,084-9,217,108 | + | C2H3g04349 | CX3g025475 | LOC_Os03g18570 | Os03g0297100 | - | Detail |
| C1H3g07511 | 3:9,219,673-9,221,314 | + | C2H3g04349 | CX3g025475 | LOC_Os03g18570 | Os03g0297100 | - | Detail |
| C1H3g00177 | 3:9,223,391-9,226,868 | - | C2H3g03893 | CX3g027573 | LOC_Os03g18590 | Os03g0297400 | - | Detail |
| C1H3g05450 | 3:9,239,825-9,240,508 | - | C2H3g00141 | CX3g025598 | LOC_Os03g18600 | Os03g0297600 | OsPYL6 | Detail |
| C1H3g01318 | 3:9,252,872-9,255,465 | + | C2H3g24611 | CX3g026248 | LOC_Os03g18620 | Os03g0297700 | - | Detail |
| C1H3g30188 | 3:9,256,770-9,259,828 | + | C2H3g04152 | CX3g031004 | LOC_Os03g18630 | Os03g0297800 | - | Detail |
| C1H3g16689 | 3:9,268,237-9,271,260 | + | C2H3g14622 | CX3g028886 | LOC_Os03g18640 | Os03g0297900 | - | Detail |
| C1H3g05714 | 3:9,276,043-9,276,591 | + | C2H3g25925 | CX3g026355 | LOC_Os03g18660 | Os03g0298100 | - | Detail |
| C1H3g07440 | 3:9,280,154-9,282,214 | + | C2H3g07384 | CX3g027215 | LOC_Os03g18680 | Os03g0298300 | - | Detail |
| C1H3g06475 | 3:9,285,370-9,289,128 | + | C2H3g24260 | CX3g025175 | LOC_Os03g18690 | Os03g0298400 | - | Detail |
| C1H3g27200 | 3:9,290,125-9,292,554 | - | C2H3g02615 | CX3g031330 | LOC_Os03g18700 | Os03g0298600 | - | Detail |
| C1H3g23179 | 3:9,293,647-9,300,180 | - | C2H3g28411 | CX3g027965 | LOC_Os03g18710 | Os03g0298700 | - | Detail |
| C1H3g30107 | 3:9,301,774-9,305,839 | - | C2H3g22544 | CX3g028856 | LOC_Os03g18720 | Os03g0298800 | - | Detail |
| C1H3g08723 | 3:9,317,441-9,318,628 | + | C2H3g15045 | CX3g029271 | LOC_Os03g18740 | Os03g0299200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g03370 | 2:20,500,130-20,501,561 | + | C1H2g26519 | CX2g024727 | LOC_Os02g36285 | Os02g0570400 | OsDTC1, OsKSL3 | Detail |
| C2H2g08598 | 2:20,526,537-20,529,407 | + | C1H2g27996 | CX2g019614 | LOC_Os02g36150 | Os02g0570500 | - | Detail |
| C2H2g05039 | 2:20,533,465-20,536,049 | - | C1H2g01402 | CX2g023226 | LOC_Os02g36190 | Os02g0570700 | - | Detail |
| C2H2g24869 | 2:20,576,137-20,577,813 | - | - | - | LOC_Os09g27734 | - | - | Detail |
| C2H2g17098 | 2:20,587,097-20,591,340 | + | C1H2g07162 | CX2g021593 | LOC_Os02g36210 | Os02g0571100 | OsCPS2, Os-CPS2, OsCyc2, OsCPS2ent | Detail |
| C2H2g28683 | 2:20,591,947-20,593,508 | + | C1H2g07162 | CX2g021593 | LOC_Os02g36210 | Os02g0571100 | OsCPS2, Os-CPS2, OsCyc2, OsCPS2ent | Detail |
| C2H2g13289 | 2:20,599,954-20,602,598 | - | C1H2g03952 | CX2g021871 | LOC_Os02g36220 | Os02g0571300 | OsKSL7 | Detail |
| C2H2g08650 | 2:20,605,548-20,607,139 | - | C1H2g03952 | CX2g021871 | LOC_Os02g36220 | Os02g0571300 | OsKSL7 | Detail |
| C2H2g08973 | 2:20,608,206-20,609,564 | - | - | - | - | - | - | Detail |
| C2H2g07065 | 2:20,621,490-20,623,110 | - | C1H2g22902 | CX2g021871 | LOC_Os02g36264 | Os02g0571800 | OsKSL9 | Detail |
| C2H2g09109 | 2:20,626,203-20,629,889 | - | C1H2g02826 | CX2g021871 | LOC_Os02g36264 | Os02g0571800 | OsKSL9 | Detail |
| C2H2g15028 | 2:20,635,878-20,639,875 | - | C1H2g09017 | CX2g024086 | LOC_Os02g36280 | Os02g0571900 | - | Detail |
| C2H2g16141 | 2:20,648,025-20,648,882 | + | C1H2g18768 | CX2g024727 | LOC_Os02g36285 | Os02g0572050 | - | Detail |
| C2H2g09753 | 2:20,655,604-20,656,650 | - | C1H2g17745 | CX2g018873 | LOC_Os02g36320 | Os02g0572300 | - | Detail |
| C2H2g01273 | 2:20,658,486-20,658,890 | - | C1H2g12070 | - | - | Os02g0572300 | - | Detail |
| C2H2g16620 | 2:20,663,417-20,670,683 | - | C1H2g26185 | CX2g023356 | LOC_Os02g36340 | Os02g0572400 | - | Detail |
| C2H2g00545 | 2:20,686,435-20,687,808 | - | C1H2g25932 | CX2g023112 | LOC_Os02g36350 | Os02g0572600 | - | Detail |
| C2H2g01996 | 2:20,697,379-20,700,730 | - | C1H2g10452 | CX2g023654 | LOC_Os02g36360 | Os02g0572900 | - | Detail |
| C2H2g05333 | 2:20,718,744-20,722,543 | + | C1H2g13546 | CX2g018889 | LOC_Os02g36380 | Os02g0573200 | OsCRY1a, OsCRY1, CRY1a, CRY2 | Detail |
| C2H2g01642 | 2:20,723,188-20,728,600 | - | C1H2g14408 | CX2g019460 | LOC_Os02g36390 | Os02g0573300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |