| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g29978 | 3:8,632,140-8,633,936 | - | C2H3g26100 | CX3g030457 | LOC_Os03g17510 | Os03g0283500 | - | Detail |
| C1H3g13527 | 3:8,634,212-8,638,837 | - | C2H3g10500 | CX3g030456 | LOC_Os03g17520 | Os03g0283600 | - | Detail |
| C1H3g19722 | 3:8,642,267-8,649,715 | + | C2H3g23371 | CX3g026672 | LOC_Os03g17540 | Os03g0283800 | - | Detail |
| C1H3g11797 | 3:8,650,695-8,654,069 | - | C2H3g29700 | CX3g029803 | LOC_Os03g17550 | Os03g0283900 | - | Detail |
| C1H3g07283 | 3:8,655,140-8,657,437 | + | C2H3g23379 | CX3g025210 | LOC_Os03g17560 | Os03g0284000 | - | Detail |
| C1H3g27931 | 3:8,658,046-8,667,318 | - | C2H3g10813 | CX3g025348 | LOC_Os03g17570 | Os03g0284100 | OsPRR73, OsCCT11 | Detail |
| C1H3g12560 | 3:8,691,223-8,691,891 | - | C2H3g28337 | CX3g026952 | LOC_Os03g17580 | Os03g0284400 | - | Detail |
| C1H3g02152 | 3:8,693,500-8,697,080 | - | C2H3g30073 | CX3g030728 | LOC_Os03g17590 | Os03g0284500 | - | Detail |
| C1H3g05023 | 3:8,697,860-8,700,838 | + | C2H3g08600 | CX3g026963 | LOC_Os03g17600 | Os03g0284600 | - | Detail |
| C1H3g02865 | 3:8,702,941-8,704,394 | - | C2H1g28459 | - | - | - | - | Detail |
| C1H3g06994 | 3:8,704,987-8,706,392 | + | C2H3g03614 | CX3g025121 | LOC_Os03g16950 | Os03g0284700 | - | Detail |
| C1H3g21431 | 3:8,707,621-8,708,946 | + | C2H3g12259 | CX3g025050 | LOC_Os03g17610 | Os03g0284800 | TOP6A3 | Detail |
| C1H3g26561 | 3:8,709,579-8,719,636 | - | C2H3g11357 | CX3g026635 | LOC_Os03g17634 | Os03g0284900 | - | Detail |
| C1H3g30930 | 3:8,720,347-8,722,674 | + | C2H3g28206 | CX3g031354 | LOC_Os03g17660 | Os03g0285100 | - | Detail |
| C1H3g11566 | 3:8,725,157-8,725,384 | + | C2H3g03876 | CX3g026969 | LOC_Os03g17670 | Os03g0285200 | - | Detail |
| C1H3g09547 | 3:8,729,761-8,729,964 | + | C2H3g05962 | - | LOC_Os03g17680 | Os03g0285300 | - | Detail |
| C1H3g07669 | 3:8,744,754-8,748,068 | + | C2H3g06105 | CX3g026553 | LOC_Os03g17690 | Os03g0285700 | OsAPXa, OsAPX1 | Detail |
| C1H3g30823 | 3:8,749,482-8,752,203 | - | C2H3g17399 | CX3g029338 | LOC_Os03g17700 | Os03g0285800 | - | Detail |
| C1H3g12993 | 3:8,754,885-8,758,010 | - | C2H3g05165 | CX3g029635 | LOC_Os03g17710 | Os03g0285900 | OsRS2Z38 | Detail |
| C1H3g05382 | 3:8,761,562-8,766,518 | + | C2H3g24206 | CX3g025186 | LOC_Os03g17730 | Os03g0286200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13527 | 1:35,592,228-35,593,819 | - | C1H1g17623 | CX1g000619 | LOC_Os01g69240 | Os01g0921500 | - | Detail |
| C2H1g04376 | 1:35,594,292-35,597,650 | + | C1H1g22149 | CX1g000315 | LOC_Os01g69250 | Os01g0921600 | - | Detail |
| C2H1g29960 | 1:35,610,814-35,612,304 | - | C1H1g03696 | CX1g005205 | LOC_Os01g69270 | Os01g0921800 | WCR1 | Detail |
| C2H1g09433 | 1:35,666,759-35,671,474 | + | C1H1g03830 | CX1g004693 | LOC_Os01g69830 | Os01g0922600 | OsSPL2 | Detail |
| C2H1g26166 | 1:35,687,859-35,688,056 | + | C1H1g12266 | CX1g007029 | LOC_Os01g69850 | Os01g0922800 | MADS51, OsMADS51, OsMADS65, MADS65 | Detail |
| C2H1g12395 | 1:35,705,899-35,708,743 | + | C1H1g07999 | - | LOC_Os01g69850 | Os01g0922800 | MADS51, OsMADS51, OsMADS65, MADS65 | Detail |
| C2H1g01640 | 1:35,721,360-35,725,310 | + | C1H1g11016 | CX1g004462 | LOC_Os01g69900 | Os01g0923300 | - | Detail |
| C2H1g04390 | 1:35,728,528-35,734,512 | + | C1H1g13300 | CX1g004735 | LOC_Os01g69910 | Os01g0923600 | - | Detail |
| C2H1g25723 | 1:35,735,075-35,740,903 | - | C1H1g01597 | CX1g001516 | LOC_Os01g69920 | Os01g0923700 | HK3, OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b | Detail |
| C2H1g05728 | 1:35,776,915-35,779,849 | - | C1H1g02952 | CX1g005730 | LOC_Os01g69940 | Os01g0923900 | - | Detail |
| C2H1g01923 | 1:35,787,046-35,788,517 | + | C1H1g29264 | CX1g005835 | LOC_Os01g69950 | Os01g0924000 | - | Detail |
| C2H1g07961 | 1:35,796,289-35,800,606 | - | C1H1g10772 | CX1g006541 | LOC_Os01g69970 | Os01g0924300 | - | Detail |
| C2H1g18855 | 1:35,816,815-35,823,491 | - | C1H1g29827 | CX1g005525 | LOC_Os01g69990 | Os01g0924600 | MHZ9 | Detail |
| C2H1g25318 | 1:35,829,628-35,831,721 | - | C1H1g07165 | CX1g000477 | LOC_Os01g70010 | Os01g0924800 | - | Detail |
| C2H1g12545 | 1:35,834,800-35,840,852 | + | C1H1g27548 | CX1g006526 | LOC_Os01g70020 | Os01g0924900 | - | Detail |
| C2H1g09893 | 1:35,842,124-35,844,153 | + | C1H1g13467 | CX1g005950 | LOC_Os01g63480 | Os01g0924933 | DPW2 | Detail |
| C2H1g29042 | 1:35,861,209-35,867,478 | - | C1H1g14986 | CX1g000475 | LOC_Os01g70060 | Os01g0925000 | - | Detail |
| C2H1g12590 | 1:35,873,631-35,874,811 | - | C1H1g14986 | CX1g000475 | LOC_Os01g70060 | Os01g0925000 | - | Detail |
| C2H1g27652 | 1:35,877,572-35,882,385 | - | C1H1g20180 | CX1g005348 | LOC_Os01g70080 | Os01g0925100 | - | Detail |
| C2H1g21256 | 1:35,884,785-35,887,277 | + | C1H1g19559 | CX1g006900 | LOC_Os01g70090 | Os01g0925200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |