| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g02805 | 3:8,495,411-8,498,787 | + | C2H3g19709 | CX3g031048 | LOC_Os03g17240 | Os03g0281000 | - | Detail |
| C1H3g19384 | 3:8,501,589-8,503,927 | + | C2H3g01163 | CX3g028226 | LOC_Os03g17250 | Os03g0281100 | - | Detail |
| C1H3g05247 | 3:8,508,143-8,509,087 | - | C2H3g30239 | CX3g026165 | LOC_Os03g17260 | Os03g0281201 | - | Detail |
| C1H3g09869 | 3:8,510,401-8,517,214 | - | C2H3g10844 | CX3g025004 | LOC_Os03g17270 | Os03g0281300 | - | Detail |
| C1H3g20489 | 3:8,518,066-8,520,873 | - | C2H3g22572 | CX3g030681 | LOC_Os03g14100 | Os03g0378500 | Os2R_MYB37 | Detail |
| C1H3g05953 | 3:8,528,301-8,530,820 | + | C2H3g23238 | CX3g030928 | LOC_Os03g17300 | Os03g0281500 | OsCrRLK1L7 | Detail |
| C1H3g23808 | 3:8,531,055-8,537,416 | - | C2H3g13223 | CX3g030523 | LOC_Os03g17310 | Os03g0281600 | OsECA1 | Detail |
| C1H3g08368 | 3:8,542,023-8,546,702 | - | C2H3g28841 | CX3g026907 | LOC_Os03g17340 | Os03g0281800 | - | Detail |
| C1H3g04312 | 3:8,549,633-8,551,996 | + | C2H3g02883 | CX3g027101 | LOC_Os03g17350 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| C1H3g07058 | 3:8,557,281-8,559,581 | + | C2H3g04384 | CX3g025177 | LOC_Os03g17370 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| C1H3g16432 | 3:8,567,232-8,573,375 | - | - | CX3g026382 | LOC_Os03g17410 | Os03g0282232 | - | Detail |
| C1H3g15208 | 3:8,591,799-8,593,016 | + | C2H3g12675 | CX3g027572 | LOC_Os03g17432 | Os03g0282700 | - | Detail |
| C1H3g13015 | 3:8,593,398-8,595,902 | - | C2H3g17220 | CX3g026586 | LOC_Os03g17440 | Os03g0282800 | - | Detail |
| C1H3g25350 | 3:8,596,431-8,600,838 | + | C2H3g11550 | CX3g027144 | LOC_Os03g17450 | Os03g0282900 | - | Detail |
| C1H3g12499 | 3:8,600,406-8,605,326 | - | C2H3g03924 | CX3g029922 | LOC_Os03g17470 | Os03g0283100 | - | Detail |
| C1H3g23272 | 3:8,607,231-8,611,124 | - | C2H5g03493 | CX3g030233 | LOC_Os07g15980 | Os05g0193800 | - | Detail |
| C1H3g00300 | 3:8,616,097-8,616,946 | - | - | - | - | - | - | Detail |
| C1H3g26286 | 3:8,619,041-8,621,151 | - | C2H3g13775 | CX3g029922 | LOC_Os03g17480 | Os03g0283200 | - | Detail |
| C1H3g04825 | 3:8,622,727-8,625,392 | + | C2H3g16412 | CX3g025299 | LOC_Os03g17490 | Os03g0283300 | - | Detail |
| C1H3g31389 | 3:8,626,250-8,628,390 | - | C2H3g25427 | CX3g029292 | LOC_Os03g17500 | Os03g0283400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g21834 | 4:19,072,248-19,076,728 | - | C1H4g01464 | CX4g032495 | LOC_Os04g36680 | Os04g0444400 | - | Detail |
| C2H4g14271 | 4:19,079,763-19,082,473 | + | C1H4g10961 | CX4g035262 | LOC_Os04g36700 | Os04g0444600 | - | Detail |
| C2H4g16668 | 4:19,087,601-19,089,007 | - | - | - | LOC_Os04g36710 | - | - | Detail |
| C2H4g22232 | 4:19,096,321-19,102,010 | + | C1H4g02574 | CX4g032233 | LOC_Os04g36720 | Os04g0444800 | - | Detail |
| C2H4g15508 | 4:19,103,105-19,104,171 | + | - | - | - | - | - | Detail |
| C2H4g01316 | 4:19,109,807-19,114,140 | + | C1H4g19141 | CX4g035751 | LOC_Os04g36720 | Os04g0444800 | - | Detail |
| C2H4g08818 | 4:19,115,768-19,118,067 | + | C1H4g01276 | CX4g033534 | LOC_Os04g36730 | Os04g0444900 | - | Detail |
| C2H4g11016 | 4:19,118,659-19,121,080 | - | C1H4g22503 | CX4g035720 | LOC_Os04g36740 | Os04g0445000 | OsSKOR | Detail |
| C2H4g13134 | 4:19,123,557-19,123,937 | - | C1H4g28185 | CX4g033595 | LOC_Os04g36740 | Os04g0117500 | - | Detail |
| C2H4g21365 | 4:19,123,946-19,124,845 | - | C1H4g28351 | CX4g033595 | LOC_Os04g36740 | Os04g0117500 | - | Detail |
| C2H4g30174 | 4:19,130,529-19,131,170 | + | C1H4g18576 | CX4g034541 | LOC_Os04g36750 | Os04g0445100 | - | Detail |
| C2H4g28013 | 4:19,134,418-19,134,960 | - | C1H4g21010 | CX4g031649 | LOC_Os04g36760 | Os04g0445200 | - | Detail |
| C2H4g27220 | 4:19,136,160-19,136,729 | + | - | CX4g032135 | LOC_Os04g36770 | Os04g0445300 | OsPMEI18 | Detail |
| C2H4g12496 | 4:19,137,905-19,145,053 | + | C1H4g28209 | CX4g036200 | LOC_Os04g36780 | Os04g0445400 | - | Detail |
| C2H4g17377 | 4:19,148,208-19,149,446 | + | C1H4g08917 | CX4g036663 | LOC_Os04g36790 | Os04g0445600 | - | Detail |
| C2H4g16998 | 4:19,151,422-19,155,196 | - | C1H4g17080 | CX4g036306 | LOC_Os04g36800 | Os04g0445700 | - | Detail |
| C2H4g01997 | 4:19,158,037-19,160,911 | + | C1H4g30441 | CX4g033224 | LOC_Os04g36810 | Os04g0445800 | - | Detail |
| C2H4g17382 | 4:19,163,102-19,163,521 | - | C1H4g30426 | - | LOC_Os04g36820 | Os04g0445900 | - | Detail |
| C2H4g15595 | 4:19,170,223-19,172,276 | + | C1H4g05743 | CX4g032205 | LOC_Os04g36830 | Os04g0446000 | - | Detail |
| C2H4g09803 | 4:19,174,071-19,175,810 | - | C1H4g05899 | CX4g032791 | LOC_Os04g36840 | Os04g0446100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |