| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16199 | 3:8,341,674-8,344,532 | + | C2H3g17017 | CX3g030195 | LOC_Os03g17030 | Os03g0278500 | - | Detail |
| C1H3g31491 | 3:8,357,161-8,365,901 | + | C2H3g02257 | CX3g025742 | LOC_Os03g17050 | Os03g0278700 | - | Detail |
| C1H3g01943 | 3:8,366,949-8,368,202 | - | C2H3g24586 | CX3g027653 | LOC_Os03g17060 | Os03g0278800 | - | Detail |
| C1H3g21484 | 3:8,369,148-8,369,780 | - | C2H3g27921 | CX3g028557 | LOC_Os03g17070 | Os03g0278900 | - | Detail |
| C1H3g21261 | 3:8,370,220-8,373,510 | + | C2H3g12181 | CX3g025758 | LOC_Os03g17060 | Os03g0278800 | - | Detail |
| C1H3g00735 | 3:8,375,657-8,376,243 | - | C2H3g30418 | CX3g029719 | LOC_Os03g17100 | Os03g0279200 | - | Detail |
| C1H3g01283 | 3:8,383,424-8,387,617 | - | C2H3g16393 | CX3g031018 | LOC_Os03g17120 | Os03g0279400 | - | Detail |
| C1H3g17646 | 3:8,390,064-8,396,765 | - | C2H3g23941 | CX3g028159 | LOC_Os03g17140 | Os03g0279600 | - | Detail |
| C1H3g15850 | 3:8,400,796-8,401,284 | - | C2H3g05642 | CX3g030469 | LOC_Os03g17150 | Os03g0279700 | - | Detail |
| C1H3g07795 | 3:8,413,338-8,414,465 | - | - | - | - | - | - | Detail |
| C1H3g07955 | 3:8,417,490-8,418,065 | - | C2H3g05642 | CX3g030469 | LOC_Os03g17150 | Os03g0279700 | - | Detail |
| C1H3g15555 | 3:8,429,441-8,430,100 | + | C2H3g27940 | - | - | - | - | Detail |
| C1H3g10805 | 3:8,431,138-8,437,522 | + | C2H3g08725 | CX3g028650 | LOC_Os03g17164 | Os03g0279816 | - | Detail |
| C1H3g09044 | 3:8,441,135-8,442,775 | + | C2H3g11175 | - | LOC_Os03g17170 | Os03g0279900 | - | Detail |
| C1H3g24073 | 3:8,443,404-8,445,164 | + | C2H3g19320 | - | LOC_Os03g17174 | Os03g0279950 | - | Detail |
| C1H3g05773 | 3:8,445,474-8,454,429 | - | C2H3g05359 | CX3g030780 | LOC_Os03g17180 | Os03g0280000 | - | Detail |
| C1H3g27832 | 3:8,463,341-8,464,136 | + | C2H3g01051 | - | LOC_Os03g17200 | Os03g0280400 | - | Detail |
| C1H3g22706 | 3:8,481,535-8,488,032 | + | C2H3g27265 | CX3g028994 | LOC_Os03g17210 | Os03g0280700 | - | Detail |
| C1H3g01230 | 3:8,489,776-8,490,735 | + | C2H3g20835 | CX3g029125 | LOC_Os03g17220 | Os03g0280750 | - | Detail |
| C1H3g29688 | 3:8,491,236-8,493,768 | - | C2H3g25701 | CX3g025025 | LOC_Os03g17230 | Os03g0280800 | OsUXS1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H11g11863 | 11:19,117,603-19,121,425 | + | C1H11g01914 | CX11g011357 | LOC_Os11g36440 | Os11g0572700 | OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO | Detail |
| C2H11g13422 | 11:19,125,558-19,127,963 | - | C1H11g18936 | CX11g011222 | LOC_Os11g36450 | Os11g0572800 | JMJ710 | Detail |
| C2H11g26770 | 11:19,130,769-19,137,484 | - | C1H11g19358 | CX11g010869 | LOC_Os11g36880 | - | - | Detail |
| C2H11g29389 | 11:19,138,250-19,142,658 | - | C1H11g13497 | CX11g010869 | LOC_Os11g36890 | Os11g0577350 | - | Detail |
| C2H11g06789 | 11:19,147,613-19,163,472 | - | C1H11g26977 | CX11g013093 | LOC_Os11g36470 | Os11g0573000 | - | Detail |
| C2H11g21322 | 11:19,169,026-19,172,428 | + | C1H11g26926 | CX11g011761 | LOC_Os11g36480 | Os11g0573200 | - | Detail |
| C2H11g10839 | 11:19,197,783-19,200,808 | + | C1H11g24728 | CX11g011586 | LOC_Os11g36740 | Os11g0575900 | - | Detail |
| C2H11g22993 | 11:19,213,454-19,215,976 | + | - | CX11g013980 | LOC_Os11g36760 | Os11g0576100 | - | Detail |
| C2H11g27642 | 11:19,236,348-19,238,024 | + | C1H11g28846 | CX11g010880 | LOC_Os11g36790 | Os11g0576400 | - | Detail |
| C2H11g01112 | 11:19,245,667-19,251,021 | + | C1H11g25490 | CX11g011986 | LOC_Os11g36930 | Os11g0577700 | - | Detail |
| C2H11g02749 | 11:19,252,164-19,253,651 | + | C1H11g20417 | CX11g012965 | LOC_Os11g36940 | Os11g0577800 | - | Detail |
| C2H11g17082 | 11:19,254,574-19,258,082 | + | C1H11g23616 | CX11g014373 | LOC_Os11g36950 | - | - | Detail |
| C2H11g11502 | 11:19,259,245-19,259,987 | + | - | - | - | - | - | Detail |
| C2H11g22955 | 11:19,266,832-19,269,990 | + | C1H11g07221 | CX11g012558 | LOC_Os11g36960 | Os11g0578100 | - | Detail |
| C2H11g13105 | 11:19,281,747-19,284,724 | + | C1H11g04768 | CX11g012558 | LOC_Os11g36960 | Os11g0578225 | - | Detail |
| C2H11g08275 | 11:19,292,554-19,297,955 | + | C1H11g25485 | CX11g012558 | LOC_Os11g36560 | Os11g0578225 | - | Detail |
| C2H11g04234 | 11:19,303,003-19,303,613 | + | C1H11g25485 | CX11g012558 | LOC_Os11g36960 | Os11g0578250 | - | Detail |
| C2H11g04331 | 11:19,318,934-19,323,956 | + | C1H11g28830 | CX11g012546 | LOC_Os11g36520 | Os11g0578500 | - | Detail |
| C2H11g16636 | 11:19,328,125-19,329,357 | + | C1H11g25206 | CX11g012020 | LOC_Os11g37010 | Os11g0578700 | - | Detail |
| C2H11g25259 | 11:19,345,087-19,349,361 | + | C1H11g10451 | CX11g012003 | LOC_Os11g37050 | Os11g0579200 | ctp-1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |