| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g23817 | 3:7,985,789-7,991,423 | + | C2H3g26882 | CX3g030405 | LOC_Os03g16440 | Os03g0271200 | - | Detail |
| C1H3g23484 | 3:7,991,896-7,993,305 | + | C2H3g19632 | CX3g027711 | LOC_Os03g16450 | Os03g0271300 | - | Detail |
| C1H3g07914 | 3:7,993,808-7,997,939 | - | C2H3g27304 | CX3g030348 | LOC_Os03g16460 | Os03g0271400 | - | Detail |
| C1H3g07286 | 3:7,998,278-7,998,943 | + | C2H3g08754 | CX3g027827 | LOC_Os03g16470 | Os03g0271500 | - | Detail |
| C1H3g24126 | 3:8,002,696-8,003,535 | + | C2H3g12514 | CX3g027903 | LOC_Os03g16480 | Os03g0271600 | - | Detail |
| C1H3g27178 | 3:8,010,932-8,012,269 | + | C2H3g28191 | CX3g028371 | LOC_Os03g16500 | Os03g0271900 | - | Detail |
| C1H3g08714 | 3:8,016,201-8,018,969 | + | C2H3g14243 | CX3g029063 | LOC_Os03g16570 | Os03g0272300 | OsSDIR1 | Detail |
| C1H3g26204 | 3:8,021,488-8,026,296 | + | C2H3g29860 | CX3g029825 | LOC_Os03g16580 | Os03g0272400 | - | Detail |
| C1H3g01466 | 3:8,038,604-8,038,903 | - | C2H3g08510 | CX3g025184 | LOC_Os03g16600 | Os03g0272900 | - | Detail |
| C1H3g27326 | 3:8,046,393-8,048,998 | - | C2H3g05813 | CX3g029074 | LOC_Os03g16610 | Os03g0273200 | - | Detail |
| C1H3g20619 | 3:8,057,384-8,067,855 | + | C2H3g18809 | CX3g029547 | LOC_Os03g18060 | - | - | Detail |
| C1H3g14918 | 3:8,068,365-8,069,341 | + | C2H3g10490 | CX3g029547 | - | - | - | Detail |
| C1H3g04298 | 3:8,077,706-8,079,164 | + | C2H3g16464 | CX3g027726 | LOC_Os03g16670 | Os03g0273800 | OsHAD3 | Detail |
| C1H3g26678 | 3:8,092,166-8,097,553 | + | C2H3g21796 | CX3g025279 | LOC_Os03g16690 | Os03g0274000 | - | Detail |
| C1H3g14789 | 3:8,117,410-8,122,659 | + | C2H3g00969 | CX3g027149 | LOC_Os03g16700 | Os03g0274300 | - | Detail |
| C1H3g26177 | 3:8,128,910-8,131,947 | + | C2H3g06926 | CX3g026360 | LOC_Os03g16730 | Os03g0274700 | - | Detail |
| C1H3g25668 | 3:8,132,194-8,135,501 | - | C2H3g23241 | CX3g025011 | LOC_Os03g16740 | Os03g0274800 | OsRLCK107 | Detail |
| C1H3g02943 | 3:8,146,268-8,149,116 | + | C2H3g07201 | CX3g028865 | LOC_Os03g16760 | Os03g0275100 | - | Detail |
| C1H3g20146 | 3:8,158,183-8,161,356 | - | C2H3g02844 | CX3g026629 | LOC_Os03g16780 | Os03g0275300 | - | Detail |
| C1H3g08484 | 3:8,170,456-8,174,921 | + | C2H3g23962 | CX3g026595 | LOC_Os03g16790 | Os03g0275400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g17746 | 3:5,298,248-5,304,864 | + | C1H3g17331 | CX3g028416 | LOC_Os03g11520 | Os03g0213900 | - | Detail |
| C2H3g08543 | 3:5,305,257-5,310,545 | + | C1H3g12951 | CX3g030880 | LOC_Os03g11530 | Os03g0214000 | - | Detail |
| C2H3g18859 | 3:5,311,539-5,315,043 | + | C1H3g14932 | CX3g028514 | LOC_Os03g11540 | Os03g0214100 | OsRPA70b | Detail |
| C2H3g25555 | 3:5,315,485-5,320,858 | - | C1H3g10644 | CX3g029924 | LOC_Os03g11550 | Os03g0214200 | - | Detail |
| C2H3g22606 | 3:5,325,484-5,328,881 | - | C1H3g04750 | CX3g027534 | LOC_Os03g11560 | Os03g0214400 | - | Detail |
| C2H3g22039 | 3:5,331,057-5,334,978 | + | C1H3g15538 | CX3g027043 | LOC_Os03g11570 | Os03g0214600 | - | Detail |
| C2H3g03744 | 3:5,337,484-5,342,418 | - | C1H3g09681 | - | - | - | - | Detail |
| C2H3g29664 | 3:5,344,016-5,347,863 | - | C1H3g00304 | CX3g025722 | LOC_Os03g11590 | Os03g0215000 | - | Detail |
| C2H3g24849 | 3:5,374,993-5,381,339 | + | C1H3g11825 | CX3g029987 | LOC_Os03g11600 | Os03g0215200 | DL, dl(lop), lop, dl, dl1 | Detail |
| C2H3g11270 | 3:5,386,951-5,389,327 | - | C1H3g00757 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g18287 | 3:5,395,313-5,395,507 | - | C1H3g04456 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g25916 | 3:5,416,591-5,421,828 | + | C1H3g30377 | CX3g026583 | LOC_Os03g11650 | Os03g0215700 | - | Detail |
| C2H3g12512 | 3:5,422,610-5,426,000 | + | C1H3g02997 | CX3g026851 | LOC_Os03g11660 | Os03g0215800 | - | Detail |
| C2H3g19342 | 3:5,426,491-5,428,521 | - | C1H3g12813 | CX3g025630 | LOC_Os03g11670 | Os03g0215900 | OsPPR676, OsATP4 | Detail |
| C2H3g13701 | 3:5,436,359-5,437,252 | - | C1H3g00186 | CX3g030485 | LOC_Os03g11680 | Os03g0216000 | - | Detail |
| C2H3g30038 | 3:5,450,317-5,452,147 | + | C1H3g15045 | CX3g027591 | LOC_Os03g11690 | Os03g0216300 | - | Detail |
| C2H3g29170 | 3:5,452,840-5,453,269 | + | - | - | - | - | - | Detail |
| C2H3g05049 | 3:5,453,922-5,455,100 | - | C1H3g15740 | CX3g029865 | LOC_Os03g11700 | Os03g0216400 | - | Detail |
| C2H3g19799 | 3:5,456,253-5,457,305 | - | C1H3g17461 | CX3g030660 | LOC_Os03g11710 | Os03g0216500 | - | Detail |
| C2H3g02073 | 3:5,459,766-5,463,790 | + | C1H3g21782 | CX3g030548 | LOC_Os03g11720 | Os03g0216600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |